FY-2008 Hatch Funded Research at the VT Agricultural Experiment Station

 

 

Project Number: VT-H01405 New Hatch

Assessing distribuition and origins of genetic diversity in Vermont's fiddlehead fern (Matteuccia struthiopteris, Onocleaceae).

Investigators: Barrington, D.

Start Date: 10/01/2007
Termination Date: 09/30/2010

GOALS/OBJECTIVES/EXPECTED OUTPUTS: 1. Assess the distribution of genetic diversity in Vermont for the fiddlehead fern, Matteuccia struthiopteris, using AFLP analysis and single-copy nuclear gene sequences. 2. Interpret the patterns of diversity and genetic divergence among populations in a geographic and ecological context to identify habitat types and geographic locations harboring the most genetic diversity. 3. Broaden the analysis, adding chloroplast DNA sequence data, to include regional and world diversity, including a) northeastern United States, adjacent Canada, b) northwestern North America, and c) Eurasia with the goal of providing a context for the variation found in Vermont. 4. Use the genetic profile to test two alternative hypotheses for the distribution of genetic variation with habitat of origin in Vermont, these are: a) greater genetic diversity will be found in central, commonly harvested and ecologically unstable river-floodplain habitats or b) greater genetic diversity will be found in rarely harvested, ecologically peripheral habitats such as upland wetlands and non-wetland habitats such as colluvial deposits on limestone outcrop slopes.

METHODS: 1. assemble a set of materials for genetic analysis including three replicates (three plants separated by the determined minimum distance) from three habitats (alluvial flood plains, non-alluvial wetlands, and colluvial deposits in rich woods habitats) and other habitats as encountered across five Vermont counties for a total minimum of forty-five accessions. 2. Genomic DNA will be extracted from silica-gel desiccated leaf material using a modified version of the CTAB protocol. We use an AFLP plant mapping protocol The mean genetic diversity (Hes) will be obtained by averaging the He values over all loci. Diversity statistics at the population level will be calculated as follows: the percent polymorphic loci (Pp) will be determined as the percent polymorphic loci averaged over all populations. The genetic diversity (Hep) will be first calculated as the mean for each locus over all populations, and then averaged over all loci. Population substructure will be evaluated using Wright's F statistics. To evaluate genetic similarities of the populations examined, all similarity and identity statistics in Arlequin will be calculated in combination with the unweighted pair group method (UPGMA). In addition, the Mantel test will be used to test the correlation of Nei's genetic distance and geographic distance. 4. Total genomic DNA will be extracted from leaf samples using the commonly used CTAB method. The chloroplast markers rbcL and trnL-F will be amplified using the polymerase chain reaction (PCR) and sequenced (details at Barrington lab webpage.) 5. Morphological Analysis: or this study we will develop a set of morphological characters to track through observation of plants in the field at the time of sampling for our genetic work, and score these characters for all plants encountered in later phases of the work. We will seek correlation of these characteristics with molecular genetic variation through a total-evidence analysis of variation (that is, we will combine the morphological and molecular data sets and look for correlation between specific molecular (AFLP) and morphological characters using principal-components analysis and phylogenetically independent contrast analysis The potential exists to identify morphological features that allow recognition of key genotypes or sets of genotypes and thus allow informed selective harvesting without genetic analysis.

Non-Technical Project Description:

The fiddlehead fern, an important wild-collected vegetable crop, has never been subjected to genetic characterization. Genetic profiling will allow assessment of conservation status and selection of stocks for crop improvement and prioritizing populations for conservation.

Phone: 802-656-0431 Fax: 802-656-0440 Email: dbarring@uvm.edu


Project Number: VT-H01412 New Hatch

Historical change and functional control of montane forest distribution in northern New England.

Investigators: Beckage, B.

Start Date: 10/01/2007
Termination Date: 10/01/2010

GOALS/OBJECTIVES/EXPECTED OUTPUTS: We will investigate the effects of climate change and acid deposition on montane forests in northern New England. The relative importance and potential for interactions between climate change and anthropogenic acidification on the dynamics of forests is largely unknown.

METHODS: We will examine whether recent declines in populations of high elevation forests are primarily controlled by i) climate, ii) acid deposition, or iii) their interaction. We will distinguish between these mechanisms by examining current and historic forest dynamics in plots stratified along elevational transects located on four montane sites that encompass a broad range of susceptibility to acid deposition. At each site, we will place plots across an elevational range that encompasses northern hardwood forests and high elevation conifer forests. We will (1) quantify historical shifts of major forest types through resurveys of historic forest plots, comparison of historic and current aerial photographs and satellite images. We will (2) attribute shifts to proximate climatic and acid-deposition factors and their interactions. Lastly, we will (3) forecast changes in forest distribution in response to projected climate change using a biogeographic model based on biophysical variables.

Non-Technical Project Description:

The distribution of forests in New England may change in response to global warming. We will examine how the current distribution of New England forests has been affected by recent climate change and we will predict how these forests will change in response to predicted future climate change.

Phone: 802-656-0197 Fax: 802-656-0440 Email: Brian.Beckage@uvm.edu

 


Project Number: VT-H01407 New Hatch

Physicochemical Properties and Survivability of Probiotics in Oats-based Symbiotic Functional Foods.

Investigators: Guo, M.

Start Date: 10/01/2007
Termination Date: 09/30/2009

GOALS/OBJECTIVES/EXPECTED OUTPUTS: Developing functional foods using oats as a major ingredient would add a variety to the diet of health conscious American population and value addition to oats. Objectives include development of a starter culture system, formulation of oats-based functional food products and their quality assessment. Finally if products are acceptable, manufacturing technologies for these new products will be developed.

METHODS: Probiotics and prebiotics simultaneously present in a product are called either symbiotics or eubiotics. Such a combination aids survival of the administered probiotic and facilitates its inoculation into the colon. Additionally, the prebiotics induces growth and increases activity of positive endogenic intestinal flora. A key idea for the proposed research is to combine health promoting component of oats - beta-glucan (prebiotic) and probiotics to develop symbiotic foods including oat yogurt, oat frozen yogurt and others. The high number of probiotics and beta-glucan content in the final products will be benefical to the health of consumers.

Non-Technical Project Description:

Functional foods consumption may help consumers to maintain good health. The purpose of this study is to develop oats-based functional foods containing whey proteins.

Phone: 802-656-8168 Fax: 802-656-0001 Email: mguo@uvm.edu

 

Project Number: VT-H01403 New Hatch

Effects of Reducing TV Viewing Time on Energy Balance in Obese or Overweight Adults.

Investigators: Harvey-Berino, J.

Start Date: 10/01/2007
Termination Date: 09/30/2009

GOALS/OBJECTIVES/EXPECTED OUTPUTS: AIM 1: Determine the effects of a reduction in TV viewing time on energy intake in overweight or obese adults. AIM 2: Determine the effects of a reduction in TV viewing time on energy expenditure in overweight or obese adults. AIM 3: Using principles from behavioral economics, determine if there is a substitute, complementary, or independent relationship between TV watching and energy expenditure, energy intake or sleep. AIM 4: Validate self-reported TV viewing measures with objective measures from TV devices. If it correlates, it is possible that future studies may rely on a self-reported TV viewing measure rather than applying the more expensive objective measure.

METHODS: Twenty-eight adults will be recruited to participate in a six-week randomized controlled trial. A 3-week observation-only baseline phase will be followed by randomization into either a 3-week observation only control group or a 3-week experimental group that will reduce TV viewing time by 50% from each participants baseline TV viewing time. Study staff will attach a device, referred to as BOB, to all participant television sets during the entire duration of the study. BOB allows the opportunity to objectively measure television watching. Participants will only have TV viewing limits if they are randomized into the experimental group. Outcome measures will be collected at baseline and experimental phases. The primary outcome of interest is energy intake (as defined below in the measurements section); the predictor variable is the presence of the TV viewing limit. Other outcomes that will be measured include energy expenditure, number of eating episodes while watching TV, time spent being physically active, time spent sleeping and weight.

Non-Technical Project Description:

Time spent watching television (TV) is consistently associated with a greater risk of obesity in adults across numerous observational studies. This study will examine the effects of reducing TV viewing time on energy intake and expenditure in overweight or obese adults. Thus, this study will provide a basis for evaluating if a reduction in TV viewing time might be a useful adjunct therapy in obesity.

Project Contact:

Harvey-Berino Phone: 802-656-0668 Fax: 802-656-0001 Email: jharvey@uvm.edu

 

Project Number: VT-H01409 New Hatch

Fungal Pathogenesis and Development of New Anti-fungal Drugs.

Investigators: Johnson, D. I.

Start Date: 10/01/2007
Termination Date: 09/30/2009

GOALS/OBJECTIVES/EXPECTED OUTPUTS: A wide variety of fungal species are pathogenic for plant (e.g., fungal smuts) and animal (e.g., aspergillosis and candidiasis) hosts. Interactions between pathogenic fungi and their hosts are extremely complex and are influenced by both fungal and host cell biology, including various signaling pathways within the fungus and between the fungus and its host. Studies from our lab and others have cemented the notion that the molecular mechanisms involved in fungal growth in the pathogenic yeast Candida albicans and the nonpathogenic yeast Saccharomyces cerevisiae are very highly conserved within all fungal species and that perturbations in these pathways have critical impacts on cellular viability and virulence. This proposal investigates the conserved molecular mechanisms that regulate S. cerevisiae and C. albicans growth, as well as the development of new anti-fungal approaches. These investigations will not only provide unique insights into the basic cell biology of pathogenic fungi, but will also lead to the development of new paradigms for anti-fungal therapeutics.

METHODS: Specifically, genetic and cell biological approaches will be used to address the following two hypotheses: 1) Localization of key signaling proteins in S. cerevisiae depends on interactions with specific targeting proteins; and 2) New anti-fungal approaches target specific signaling pathways in C. albicans.

Non-Technical Project Description:

A wide variety of fungal species are pathogenic for plant (e.g., fungal smuts) and animal (e.g., aspergillosis and candidiasis) hosts. Interactions between pathogenic fungi and their hosts are extremely complex and are influenced by both fungal and host cell biology, including various signaling pathways within the fungus and between the fungus and its host. This proposal investigates the conserved molecular mechanisms that regulate S. cerevisiae and C. albicans growth, as well as the development of new anti-fungal approaches. These investigations will not only provide unique insights into the basic cell biology of pathogenic fungi, but will also lead to the development of new paradigms for anti-fungal therapeutics.

Project Contact: D. I. Johnson Phone: 802-656-8203 Email: Douglas.Johnson@uvm.edu
Web site: http://www.uvm.edu/microbiology/johnsonlab.html

 


Project Number: VT-H01417MS New Hatch/Multistate
Multistate Project: NE1028

Mastitis Resistance to Enhance Dairy Food Safety

Investigators: Kerr, D. E.

Start Date: 10/01/2007
Termination Date: 09/30/2012

GOALS/OBJECTIVES/EXPECTED OUTPUTS: 1. Characterization of host mechanisms associated with mastitis susceptibility and resistance.

METHODS: Host mechanisms associated with mastitis susceptibility and resistance may be dependent on single nucleotide polymorphisms (SNPs) in the promoter regions of genes associated with the innate immune response. We have been using microarray technology with the bovine Affymetrix GeneChip to identify innate immune response genes in biopsies obtained from bovine mammary glands, or in cultured bovine mammary epithelial cells, following challenge with the LPS component of E. coli. Our results clearly reveal an induction of the innate immune system presumably resulting from LPS recognition by TLR4 receptors leading to activation of the NF-kB signaling pathway. The entire list of immune related genes induced by more than 2 fold includes 37 genes in common to both the biopsy and tissue culture experiments, 77 additional genes induced in the biopsies alone, and 14 additional genes induced in the cell culture alone. The list of genes induced by five-fold or greater in either the biopsies or the cultured cells includes 5 cytokines, 11 chemokines, and 11 acute phase proteins. Our data clearly indicates the robust response of the bovine system. We now propose to locate and evaluate SNPs in the promoter region of genes from a prioritized list selected from our microarray data. We will use PCR to amplify the proximal 1 kb regulatory region which will then be sequenced to identify SNPs. DNA from ten non-sib cows will be analyzed which will allow detection of major alleles. Selected alleles will then be sub-cloned into a luciferase expression vector. Luciferase activity of individual alleles will then be determined in transiently transfected bovine mammary cells (MAC-T) under control and LPS stimulated conditions. The cells will be co-transfected with a green fluorescent protein (GFP) expression plasmid to normalize for transfection efficiency. The next step will be to evaluate if functional SNPs identified in the luciferase system are confirmed in LPS-challenged peripheral blood mononuclear cells (PBMCs) obtained from animals homozygous for the appropriate alleles. The PBMCs will be isolated by standard techniques, allowed to equilibrate for 16 h in media, and then challenged for 3 h with LPS. Total RNA will then be collected from the cells for quantitative analysis by RT-PCR. Expression profile of the gene in question will be compared with three other immune related genes that will serve to confirm the LPS stimulation. Functional SNPs identified in this work may lend key direction into future studies on host mechanisms associated with mastitis susceptibility and resistance.

Non-Technical Project Description:

Bovine mastitis continues to have a major negative impact on the efficient production of high quality milk, and is a disease that affects the well-being of a majority of dairy cows. The purpose of this research is to detect and evaluate genetic differences between animals in genes involved in the response to infection.

Phone: 802-656-2113 Fax: 802-656-8196 Email: david.kerr@uvm.edu

 


Project Number: VT-H01404 New Hatch

Health Capital as Measured by Obesity in Single Headed Female Households.

Investigators: Kolodinsky, J.

Start Date: 10/01/2007
Termination Date: 09/30/2010

GOALS/OBJECTIVES/EXPECTED OUTPUTS: To identify how types of food assistance received by a household impact health capital as measured by a healthy weight; To identify how time allocation over the course of the benefit period (monthly), including time spent shopping, cooking and eating (both at and away from home), as well as in energy expenditure, impact health capital is measured by a healthy weight; To identify how family composition and competing time demands impact health capital, including age, education, wage rates, labor force participation, and other household production activities.

METHODS: This project examines the production of health capital as measured by a healthy weight in a sample of single headed households with children. Using the theory of health capital, a household production model and a combination of the American Time Use Survey (ATUS), Current Population Survey (CPS), and Consumer Expenditure Survey (CES) data, time and purchased inputs used to produce meals and energy expenditure (activity and exercise) will be determined and their impact on obesity estimated. The mediating effects of productivity and preference shifters, the price of time, and non wage income sources, including food assistance will be investigated. Estimation will control for sample selection bias related to the participation in food assistance programs and impute purchased inputs into meal production using CES data. The study will increase our understanding of how trade-offs in time and purchased input use in low income households affect the production of health capital as measured by a healthy weight.

Non-Technical Project Description:

The contribution of overweight and obesity to the loss of human capital in the labor force is becoming an area of increasing focus in both the private and public sector. This project examines the production of health capital as measured by a healthy weight in a sample of single headed households with children.

Phone: 802-656-0137 Email: jkolodin@uvm.edu


 

Project Number: VT-H01406 New Hatch

Where Does Vermont Milk Go? Examining Distribution of Vermont Milk From Transportation and Economics Perspective.

Investigators: Liang, C.

Start Date: 10/01/2007
Termination Date: 10/01/2010

GOALS/OBJECTIVES/EXPECTED OUTPUTS: This study will develop an integrated quantative/qualitative approach to determine the advantages and disadvantages for dairy farmers, dairy cooperatives and dairy manufacturers of doing business in Vermont. Milk flow from farm to processor to retail, broken down by milk component (whole milk, cream and skim), with links outside the state and region wll be analyzed. Personal interviews and historical data will be utilized to predict future trends in Vermont Dairy Industry for the next 5, 10 and/or 15 years.

METHODS: Farm production data, sales volume, milk prices and other farm level information will be gathered from the Vermont Ag agnecy. Focus group interviews will be conducted to gather information regarding market situation and outlook. Other published milk production and transportation information will be applied to establish forecasting models.

Non-Technical Project Description:

Vermont Dairy Industry faces tremendous challenges from strong competitions and weak demand in the market. Some of the critical issues include milk price volatility, rising costs of production, lack of farm transition plans and consolidation in dairy processors. This proposed research will utilize the information gathered from the literature review, vertical integration and market distribution to further analyze distribution patterns (how Vermont milk flows between farms, processors and retailers including quantities and grades), transportation needs (bottlenecks, costs, challenges), and potential future trends and opportunities for Vermont Dairy Industry.

Project Contact:

Liang Phone: 802-656-0754 Email: cliang@uvm.edu


 

Project Number: VT-H01416 New Hatch

The impact of milk fat-derived trans/fatty acids on biomarkes of atherosclerosis.

Investigators: Lock, A. L.; Kraft, J. Rice, B.

Start Date: 10/01/2007
Termination Date: 09/30/2008

GOALS/OBJECTIVES/EXPECTED OUTPUTS: The last decade has seen increased consumer interest in the link between diet and health. The effect of dietary fats on human health and well-being is of special interest, and this has been fueled by the recognition that certain dietary fatty acids can impact human health. Research over the last 20 years has revealed that trans fatty acids (TFA) are of particular significance as risk factors for atherosclerosis, the major cause of death in the US and other industrialized countries. Consequently, the US Food and Drug administration have recently introduced the labelling of the TFA content of all food products. This is based on current public health policy recommending a reduction in the intake of TFA principally due to their putative association with elevated plasma concentrations of cholesterol and LDL along with lower concentrations of HDL. With the introduction of trans fat legislation, the food industry is switching from the use of PHVO to alternative plant oils for the production of many industrially prepared foods. This has effectively reduced the intake of TFA derived from industrial sources and total TFA intake. The remaining dietary intake of TFA will be mainly from ruminant-derived food products and there is no obvious means to make similar reductions in the TFA content of ruminant products. We propose that the grouping of individual TFA as a single category is inappropriate due to individual isomers potentially having different biological effects. Vaccenic acid (trans-11 18:1; VA) is the predominant TFA present in ruminant products, whereas industrial sources of TFA in the human diet typically contain a Gaussian distribution of trans 18:1 isomers that centers on trans-9 (elaidic acid; EA), trans-10, and VA. Consistent with this, epidemiological studies have observed a positive relationship between CHD risk and the intake of TFA derived from vegetable fats, with either a negative or no relationship between CHD and animal-derived TFA. Our hypothesis is that VA is unique compared with other trans 18:1 isomers due to the introduction of a cis-9 double bond into its structure to form cis-9, trans-11 CLA via the enzyme delta 9-desaturase. Although previous work has mainly focused on the impact of TFA on lipoprotein metabolism, it is important to recognize that blood lipid profiles may not be the best indicator of CHD. Although atherosclerosis is often considered a chronic inflammatory disease, to date there have been no studies examining the effect of individual TFA on inflammatory markers of atherosclerosis. The importance of this is highlighted by a recent report from the Nurses Health Study which showed that TFA intake from industrial sources was related to plasma biomarkers of inflammation and endothelial dysfunction. The objectives of this proposal are to elucidate the effects of VA and EA either as pure fatty acids, or when delivered as components of the human diet, on inflammatory biomarkers associated with atherosclerosis. This work represents an opportunity to improve our understanding of the role of TFA as bioactive components in the etiology of atherosclerosis.

METHODS: Our aim is to examine the effects of individual TFA, or food components containing these fatty acids, on biomarkers of inflammation in the cp/cp rat vascular smooth muscle cell (VSMC) model. VSMCs, grown from aortic explants from cp/cp male rats, are motile, have marked growth rates in culture, and display a growth response to a number of cytokines. VSMCs will be cultured in Dulbeccos modified Eagles Medium (DMEM) supplemented with 10% fetal bovine serum (FBS), penicillin (50 units/ml), and streptomycin (50 ug/ml) at 37oC in 5% CO2. Cells will be grown to confluence in 24-well plates and then made quiescent by incubation with serum-free media for 24 h. Differentiation will be initiated in DMEM containing 10% FBS and 10 ug/ml glucose for an additional 48 h. After 4 d of differentiation, cells will then be incubated in the presence of BSA vehicle, or 50 umol/l trans-11 18:1 (VA), trans-9, 18:1 (EA), or cis-9, 18:1 (oleic acid). Follow up studies will examine the effects of these fatty acids when they are supplied as components of common foods in the human diet, ie. as a mixture of various fatty acids. RT-PCR will be used to detect mRNA expression of E-selectin, vascular cellular adhesion molecule-1 (VCAM-1), tumor necrosis factor-alpha (TNF-alpha), Interferon (IFN), and Interleukin-6 (IL-6). In the case of the VA treatment, our hypothesis is that inflammatory markers will be improved (directional changes indicating a reduced atherogenic risk). We expect that the EA treatment will shift these biomarkers to reflect an increased risk for atherosclerosis. The work described herein represents pilot work in this area which, in the future, will be used as preliminary data when seeking further funding.

Non-Technical Project Description:

Research over the last 20 years has revealed that trans fatty acids (TFA) are of particular significance as risk factors for atherosclerosis, the major cause of death in the US and other industrialized countries. With the recent introduction of nutritional labelling of the TFA content of food products, the need for scientific knowledge of specific effects for individual TFA and different sources of TFA is of obvious importance. This project aims to elucidate, the impact of specific TFA on inflammatory markers associated with the development of atherosclerosis.

Project Contact: A. L. Lock Phone: 802-656-0142 Fax: 802-656-8196 Email: adam.lock@uvm.edu


 

Project Number: VT-H01401 New Hatch

The regulation and manipulation of lipid digestion and metabolism in the dairy cow

Investigators: Lock, A. L.

Start Date: 10/01/2008
Termination Date: 09/30/2010

GOALS/OBJECTIVES/EXPECTED OUTPUTS: Nutrition of the dairy cow is the major factor that impacts rumen lipid metabolism. As our understanding of fatty acid digestion and metabolism has advanced we now recognize that fatty acids produced in the rumen have specific and potent effects on ruminant metabolism and human health. Our proposed studies focus on improving our understanding of the effect of dietary components on the formation of bioactive fatty acids in the rumen, which are subsequently absorbed and incorporated into milk fat. In particular, this grant focuses on the formation of trans 18:1 (TFA) and conjugated linoleic acid (CLA) isomers and how dietary components impact the formation of these fatty acids in the rumen. Understanding their formation in the rumen via bacterial biohydrogenation (BH) is crucial because human nutritionists are interested in specific milk fat-derived TFA and CLA isomers because of their potential impact on human health, and at the same time dairy nutritionists are concerned with the formation of different TFA and CLA isomers because these have been shown to be potent inhibitors of milk fat synthesis in the mammary gland which can result in dietary-induced milk fat depression (MFD). Since most milk pricing systems in the U.S. are now based on yields of milk components, with greater value placed upon yields of milk fat and milk protein, any reduction in milk fat yield results in a significant loss in revenue. Unfortunately, troubleshooting MFD on dairy farms remains one of the more challenging tasks within overall nutritional management of dairy cows. In order to further understand the causes of dietary-induced MFD we need to better understand the impact of feed components on rumen lipid metabolism and changes that cause an increase in the production of specific BH intermediates. Therefore, improving our appreciation of the impact of nutrition on rumen lipid metabolism and milk fatty acid composition will allow the dairy industry to be better placed to respond to changes in milk pricing systems, dietary recommendations, and consumer demands.

METHODS: This proposal aims to improve our understanding of the effects of dietary antioxidants on rumen lipid metabolism, milk fat synthesis, and milk fatty acid composition. The working hypothesis is that dietary antioxidants will maintain normal BH pathways in the rumen, thus minimizing the formation of trans-10, cis-12 CLA, trans-10 18:1 and related intermediates and reducing the risk of MFD, and at the same time maximizing the milk fat content of rumenic acid and vaccenic acid. We will use both in vitro and in vivo approaches to examine a number of aspects of dietary component-rumen BH interactions and subsequent effects on milk fat: (1) Identify the effect of dietary antioxidants on the formation of rumen BH intermediates in vitro under dietary situations characteristic of MFD. (2) Examine the interaction between dietary antioxidants, distillers grains and fiber level in vitro on rumen BH intermediate formation and in vivo on rumen BH, milk fat synthesis and fatty acid composition. (3)Establish the interaction between dietary antioxidants and monensin in vitro on the formation of rumen BH intermediates and potential effects on milk fat synthesis. For the in vitro work, a dual effluent continuous culture system will be used which will be carried out in collaboration with Miner Research Institute, Chazy NY. Fermenters will be fed the experimental diets automatically in two equal feedings at 12 h intervals. All treatments will be fermented in triplicate for 10 d in continuous cultures. The first 7 d will be for equilibration and during the last 3 d the effluents will be collected in an ice bath and a 1L sample composited and saved for analysis. Fatty acid analysis of the continuous culture effluent samples will be carried out per our standard operating procedures. The in vivo aspect of this proposal will utilize mid-lactation cows housed in tie-stalls and fed individually at the UVM Miller Research Farm. Production parameters of animals prior to being enrolled onto the study will be used for blocking and covariate purposes. Cows will be fed a total mixed ration once per day and milked two times per day. All experimental procedures involving animals will be approved by the UVM Animal Care and Use Committee. Diets will be based on results obtained from our in vitro work. Treatment effects on feed intake, milk product and milk components as well as milk fatty acids composition.

Non-Technical Project Description:

Since most milk pricing systems in the U.S. are now based on yields of milk components, with greater value placed upon yields of milk fat and milk protein, any reduction in milk fat yield results in a significant loss in revenue. In order to further understand the causes of dietary-induced milk fat depression we need to better understand the impact of feed components on rumen lipid metabolism and the formation of specific biohydrogenation intermediates that subsequently reduce milk fat synthesis in the mammary gland. Therefore, the purpose of this project is to improve our understanding of the impact of dietary components on rumen lipid metabolism, milk fat synthesis, and milk fatty acid composition. Particular emphasis is on the impact of dietary antioxidants when diets contain high amounts of distiller grains.

Project Contact: A. L. Lock Phone: 802-656-0142 Fax: 802-656-8196 Email: adam.lock@uvm.edu

Other participating STATES:
NY New York


 

Project Number: VT-H01413 New Hatch

Spatial Analysis of Agroecosystems and Their Habitat Components to Develop Guidelines for Designing Multifunctional Farms.

Investigators: Lovell, S.

Start Date: 10/01/2007
Termination Date: 09/30/2008

GOALS/OBJECTIVES/EXPECTED OUTPUTS: Objective 1: Delineate and classify on-farm tree habitats based on land cover, land use and function, biophysical features (slope, soil type, etc.), and spatial characteristics (shape, size, and proximity to water) to determine their contribution to landscape heterogeneity. The first objective is designed to test the hypothesis that Vermont farms include a variety of different habitat types with trees and that these habitats can be classified based on a combination of existing data and new information to be obtained through landscape analysis using aerial or satellite images and verified through site visits. We intend to develop a method to differentiate 5 to 10 categories of tree cover that are likely to include: orchards (fruit-producing tree habitats), riparian forests (linear features located along water features), hedgerows (linear features located at a crop field border), pastures with dispersed trees, and timberland patches (Northern hardwood subdivided into functions for maple sugaring, saw-timber, or no products). Once the classification system has been developed, we will delineate these treed habitat types on 20 farms in a representative subwatershed in the rural Lamoille watershed of the Lake Champlain Basin. Methods will also be evaluated for conducting an automated classification of habitats across the entire subwatershed to determine the contribution of treed habitats to landscape heterogeneity. Objective 2: Evaluate the relationship between spatial configuration of on-farm treed habitats and hydrologic features in a subwatershed to identify potential for on-farm treed habitats to reduce the negative impact of agricultural activities on water quality in the Vermont. I hypothesize that on-farm treed habitats contribute significantly to the ecological function of improving water quality, and that this function varies depending on habitat type and spatial configuration in relationship to hydrologic features and other adjacent habitats. To test this hypothesis, a detailed hydrologic model will be developed for the subwatershed from existing digital elevation models (DEMs). To assess potential water quality benefits, spatial relationships between hydrologic features and treed habitats will be quantified. This information will allow me to identify locations where treed habitats serve as buffers for hydrologic features and where future treed habitats could be located to improve water quality. To specifically address the relationship between treed habitats and phosphorus reduction, a literature review will be conducted to summarize available information related to the uptake and assimilation of phosphorus by trees, understory species, and microbial communities, as well as physical characteristics that impact the trapping of sediment-bound phosphorus.

METHODS: This study will be conducted in rural landscape of the Lamoille Watershed of the Lake Champlain Basin in Vermont. The Lake Champlain Basin covers 8,234 mi2 in Vermont, New York, and Quebec. The quality of the water in the lake has declined as a result of agricultural activities in the watershed, including nutrient runoff to rivers that drain into the lake (especially phosphorus). Efforts to reduce the negative impacts of agricultural practices in this watershed through the incorporation of on-farm treed habitats offer great potential for improving the quality of a lake that runs nearly the entire length of Vermont (US Army Corps of Engineers 2004). The Lamoille Watershed was selected as the study site due to the high percentage of land in agriculture, presence of protected forest, diversity in habitat types, and known presence of diversified farms. To characterize landscape structure, we will begin with a course-scale assessment of the Lamoille Watershed. At the course scale of the watershed, we will collect data layers on land use, population density, roads, topography, soil types, and hydrology. These data layers are available through various resources such as the University of Vermont (Library Map room, VCGI, regional planning commissions), and this work is currently underway. A hydrologic model of the subwatershed will be developed to assess the relationship between hydrologic features and treed habitats. At the scale of individual farms, we will delineate and classify habitats containing tree cover. These classes will be based on both biotic and abiotic features, distinguishing differences in land management and vegetation cover. On each farm, we will identify and quantify treed habitats from assessment of high resolution aerial images in GIS and field surveys. Landscape habitats will be characterized by: landscape contribution (density and area), spatial geometry (size and shape), spatial relationships (connectivity and proximity), and biophysical features (slope, soil type, and hydrology) (see methods by Baschak and Brown 1995; Paterson and Connery 1997; Dramstad et al. 2001; Schmucki et al. 2002; Thenail and Baudry 2004; Hietala-Koivu et al. 2004; Lafortezza and Brown 2004; Leon and Harvey 2006). Different habitat types will be precisely georeferenced using the Trimble GeoXH handheld unit with subfoot accuracy and mapped using ArcGIS software. A hierarchical system will be used to classify landscape habitats based on land cover (determined from aerial imagery and groundtruthed for accuracy), vegetation type, vegetation quality, and management practices (Boutin et al. 2003, Ellis et al. 2006, Freemark et al. 2002, Lofvenhaft et al. 2002). The biophysical features (vegetation, topography, soil type, % cover) of the site will be documented based on existing GIS databases.

Non-Technical Project Description:

The functions of on-farm habitats with trees are often underrepresented by strategies that focus primarily on the economic value of farmland. More research is needed to understand the role of these important habitats in contributing to ecosystem services by improving water quality and increasing landscape heterogeneity. This research project will help policy-makers determine the types of habitats to promote through conservation programs, while also guiding farmers in decisions about designing and managing the farm landscape.

Project Contact: S. T. Lovell Phone: 802-656-0466 Email: Sarah.Lovell@uvm.edu


 

Project Number: VT-H01415 New Hatch

Ecosystem Services Conservation and Farmer Livelihoods in the Vermont Agriculltural Landscape.

Investigators: Mendez, E.

Start Date: 10/01/2007
Termination Date: 09/30/2008

GOALS/OBJECTIVES/EXPECTED OUTPUTS: 1. To revise the scientific and grey literature, with a focus on Vermont and the Northeastern U.S., on the following topics: ecosystem services conservation in agriculture; programs and initiatives that support conservation on-farm; and farmer perceptions and participation in conservation programs. 2. Analyze the perceptions of ecosystem services conservation and the use of tree cover on-farms, from farmers, and other key stakeholders (extensionists, researchers, etc.); and 3. Develop collaborative agreements with extension and farmer organizations for the continuation of future research. Hypothesis 1. Farmers in the Lamoille watershed are interested in participating in conservation initiatives, if this participation has an impact on their livelihoods. Hypothesis 1. Farmers in the Lamoille watershed are interested in participating in conservation initiatives, if this participation has an impact on their livelihoods.Vermont ranks high in area under conservation easements and land trusts, and there are a great number and diversity of non-profits working in this area (Deb Heleba, Center for Sustainable Agriculture, Personal Communication), and we expect this to be illustrated both in our literature review and in our interviews with farmers and key stakeholders. Hypothesis 2. The concepts of on-farm ecosystem service conservation and its relationship to farmer livelihoods are poorly understood by Vermont farmers and key stakeholders. Merelender, et. al (2004) found that there is great confusion both among farmers and the non-profits and trusts that provide income for conservation on the nature of each mechanism and how it can best benefit farmers. We expect this to be the same in Vermont, and envision our data will elucidate how we can make this clearer for all stakeholders, in order to make these mechanisms more accessible and effective.

METHODS: Objective 1. Revise the scientific and grey literature, with a focus on Vermont and the Northeastern U.S., on the following topics: ecosystem services conservation in agriculture; programs and initiatives that support conservation on-farm; and farmer perceptions and participation in conservation programs. We have begun to contact extension organizations, and revising UVM graduate thesis, extension reports, etc. to find specific information on the application of conservation easements and land trusts in the Lamoille area. The organizations we have contacted include the Center for Sustainable Agriculture (CSA), the Norteastern Organic Farmers Association (NOFA), and the Vermont USDCA NRCS office. Objective 2. Analyze the perceptions and understanding of ecosystem services conservation and the use of tree cover on-farms, from farmers, and other key stakeholders (extensionists, researchers, etc.) Semi-structured and informal interviews and focus groups will be conducted with farmers to document their perceptions of the contribution of biodiversity conservation to their livelihoods (Butler et al., 1995; Fetterman, 1998; Stewart et al., 2006). As a first step, we will develop surveys, interview and focus group guides. We do not anticipate undertaking this activity until the second half of the year of the research (starting Jan-Feb 2008), which will allow us to also revise methodological approaches for this type of research (for example, see (Forshay et al., 2005). We will be using mostly qualitative analyses and descriptive statistics to analyze this data. Expected Results This research should provide the following sets of results that will be important for biodiversity conservation, farm management and farmer livelihoods in the Vermont rural landscape: 1. First, we will be able to document what on-farm conservation initiatives are in place in Vermont, what organizations support these programs, and the challenges and opportunities they are facing. This will be useful to further our knowledge on the potential and limitations of incorporating agroecosystems, in their present state, into biodiversity conservation programs. 2. Second, we will systematically assess the perceptions and understanding of using agriculture as part of ecosystem conservation initiatives from farmers and other key stakeholders. These results are key to examine the adoption and development potential of these initiatives. 3. We will develop partnerships with extension and farmer organizations that participate in in, and facilitate farmer involvement in the next phase of the research.

Non-Technical Project Description:

As human populations increase, the area that can be used for environmental conservation is becoming more limited. Thus, the importance of agricultural landscapes as areas that can contribute to conservation is increasing in most areas of the world. However, it is still unclear how conservation initiatives in agricultural landscapes can be implemented so that they can benefit both farmers and the environment. This start-up research project will revise information from the literature and interviews with key stakeholders (farmers, extensionists, policy makers) on the current state, challenges and opportunities of conserving ecosystem services in an agricultural landscape of Vermont. This data will then serve to develop a longer term, collaborative study (with Professor Sarah Lovell at UVM’s Plant and Soil Science Department), which will measure the conservation of ecosystem services of tree biodiversity and water conservation. In addition this subsequent study will analyze the challenges and opportunities that Vermont farmers face

Project Contact:

Mendez Phone: 802-656-2539 Fax: 802-656-8015 Email: emendez@uvm.edu


 

Project Number: VT-H01410 New Hatch

A Web-Based Energy Balance Tutorial for Middle School Students.

Investigators: Pintauro, S. J.

Start Date: 10/01/2007
Termination Date: 09/30/2009

GOALS/OBJECTIVES/EXPECTED OUTPUTS: 1. To develop a Web-based, multimedia, interactive, online learning environment targeted at middle school students (ages 11-13) on the topic of Energy Balance. The Web site will be constructed around an existing, well-tested energy balance curriculum developed by the NIH for this age group. In addition, the Web site tutorials will be designed to meet National Science Education Standards for this age group. 2. To evaluate the effectiveness of the program at meeting the needs of students with varying learning styles. Effectiveness will be measured by comparing pre- and post-cognitive tests, student attitudes regarding the use of the program, and assessment of individual student learning styles.

METHODS: We will develop a multimedia, interactive, Web-based computer application for middle school students on the topic of Energy Balance. The content for the Web application will be adapted from a validated NIH middle school curriculum. We will test the effectiveness of our Web application by recruiting middle school students from across the United States. This recruitment will be accomplished by contacting middle school science and family and consumer sciences teachers through professional listservs and direct emails. Students from participating schools will complete a validated cognitive pre-test prior to using the Energy Balance Web application. They will also complete a learning style assessment. After completing the pre-test, students will be given access to the Web application. After completing all of the lessons and requirements of the Web application, they will be administered a cognitive post-test and an attitude assessment instrument. The principle outcome measures for this project will be changes in scores on the cognitive evaluation instrument between pre-test and post-test, and correlations between change in score and learning style. Correlations will be statistically evaluated by linear regression analysis. Analysis of covariance will be used to assess differences while controlling for any possible confounding factors, when identified.

Non-Technical Project Description:

It is estimated that 25% of children between the ages of 12 and 19 are overweight. This project will evaluate the effectiveness of a Web-based learning application for teaching middle school children about energy balance and its relationship health.

Project Contact: S. J. Pintauro Phone: 802-656-0541 Fax: 802-656-0407 Email: stephen.pintauro@uvm.edu


 

Project Number: VT-H01408 New Hatch

Entomopathogenic Fungi and Predators for IPM of Western Flower Thrips.

Investigators: Skinner, M.

Start Date: 10/01/2007
Termination Date: 09/30/2010

GOALS/OBJECTIVES/EXPECTED OUTPUTS: The main goal of the current project is to enhance opportunities to use biological control agents for thrips IPM in greenhouses. This will be achieved through assessing the impact of soil applications of granular formulations of insect-killing fungi on the population dynamics of western flower thrips and then evaluating the combined effect of granular fungal formulations and predatory mites in a banker plant system to prevent thrips population buildup. This Hatch initiative therefore contributes to all of the areas defined in the multi-state objective: Development, evaluation and safety of entomopathogens for homopteran and other piercing-sucking insects.

METHODS: The studies proposed address impediments to the greater utilization of biological control in greenhouse bedding plant production, and will facilitate the increased use of predatory mites and banker plants to provide sustained thrips management. We have tested the use of indicator/banker plants to provide early detection of thrips in greenhouses and to maintain populations of predatory mites and other natural enemies. Though they have been found effective as a pest monitoring tool, they also serve as a reservoir for thrips, which can in turn lead to a pest problem if not controlled. We will test the application of granular formulations of insect-killing fungi to reduce thrips populations that pupate in the soil. Improved granular fungal formulations developed in complementary projects, and proven to persist in the soil, will be tested against western flower thrips within marigold banker plants grown in standard potting medium. Experiments will be conducted under controlled caged conditions to generate information on efficacy of each component alone and in combination. In the final year, the system will be tested in commercial greenhouses to further assess its application under real world conditions. This will provide insights regarding how banker plants fit into a commercial setting, and will enable us to obtain grower input on its applicability.

Non-Technical Project Description:

The greenhouse industry is a vital and dynamic component of New England's diversified agricultural economy. Pest control strategies are heavily reliant on chemical pesticides, which are neither sustainable nor desirable. Novel approaches that increase opportunities to use biological controls in the production of greenhouse ornamentals are badly needed. This project will assess granular fungal-based formulations for use in potting media against western flower thrips and will provide growers of greenhouse bedding plants with tools to increase their use of natural enemies as part of a total IPM program.

Project Contact:

Skinner Phone: 802-656-5440 Fax: 802-656-5441 Email: mskinner@uvm.edu
Web site: http://www.uvm.edu/~entlab/


Project Number: VT-H01414 New Hatch

Robustness of Agricultural Freight Transportation Networks Serving Vermont.

Investigators: Smith, J.

Start Date: 10/01/2007
Termination Date: 09/30/2009

GOALS/OBJECTIVES/EXPECTED OUTPUTS: The overall objective of this project is to develop a model of agriculture-related transportation in Vermont. The specific aims are to: 1) Characterize and model the transportation links supporting 3 demonstration dairy farms. Data will include origin and destination of all inputs, outputs, and service providers. These constitute transportation contacts. Values of agricultural freight being delivered to and departing from each farm will be estimated. Time and/or distance of routes will be included. The data need to be mapped temporally, spatially, and economically. 2) Understand the potential outcomes of various transportation disruptions. Features common to various disruptions are the introduction of transportation delays, changes in contact numbers, changes in fuel/transportation costs, lack of freight capacity, and loss of product. Using the Markov chain Monte Carlo method, we will quantify the impacts of scenarios of varying scale and intensity. Model outputs should reflect effects on overall transportation efficiency in terms of time, energy, and overall economics. 3) Increase awareness of emergency management personnel regarding agricultural transportation issues. Emergency management would become involved in ensuring the movement of feedstuffs and food under extraordinary conditions. Commonplace 'just-in-time' inventory practices reduce food security. By understanding these issues, emergency management will be motivated to enhance community preparedness.

METHODS: Data collected for this project will be used to build a model of the transportation networks of several discrete farms in Chittenden County. Ideally, the project will include one larger conventional dairy (over 200 cows in milk), one smaller conventional dairy (under 100 cows), and one organic dairy in this demonstration project. If necessary, the project will go outside of Chittenden County to locate an organic dairy willing to participate. The transportation linkages will include both inputs (e.g., feed brought onto the farm) and outputs (e.g., raw milk to processor) as illustrated in Figure 1 (not shown). Many transportation routes involve linkages with other farms. For the purposes of this project, only transportation requirements up to the bottling or processing plant will be studied, and not the distribution of processed products. The baseline model will include transportation of inputs and outputs under 'normal' circumstances. To build the model, a significant amount of data needs to be collected as shown in Table 1 (not shown). Data, like origin and destination of feedstuffs, volume, mode of transportation and routes, are needed to properly model the feed input transportation requirements. Some of the necessary data (e.g. route capacity, load limits and infrastructure) may be available from the Vermont Agency of Transportation's statewide modeling division or local planning commission. Selected farms will be invited to participate and provided an explanation of how the project goals will enhance emergency planning for the dairy sector. An incentive payment will be made to farms that complete the data collection process. The model will be developed and validated by Dr. Yeong-Tzay Su, an expert in stochastic modeling. Using Markov chain Monte Carlo simulations, the effects of various disruptions entered into the model can be assessed. The advantage of this approach is that the effect of a single perturbation on multiple variables can be determined simultaneously. We will 'shock' the network, for instance, by imposing a loss of travel routes, shortage of drivers, or delays caused by enhanced biosecurity and movement controls. Other examples of disruptions are shown in Figure 2 (not shown). The objective function will maximize the completion of routes under specific conditions imposed on the model. Transportation outcomes and economic efficiencies can be compared between the baseline and 'disrupted' scenarios. Scenarios can model and compare various movement control responses that could be implemented, for instance, in the face of a highly contagious disease emergency.

Non-Technical Project Description:

Disruptions of transportation networks serving farms decrease efficiency and profitability of farm businesses, as well as potentially affecting availability of farm products. This project proposes to model agricultural transportation for a limited number of dairy farms, identify critical links in transportation networks, and enhance emergency preparedness.

Phone: 802-656-4496 Fax: 802-656-8196 Email: julie.m.smith@uvm.edu