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Lake Champlain CTD data (R/V Melosira 2012-2021): Seabird CTD data R/V Melosira

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  • Forest Ecosystem Monitoring Cooperative

    • Address:
      705 Spear Street
      South Burlington, Vermont 05403
      United States of America

      Phone: (802) 391-4135
      Email: femc@uvm.edu
      Website: www.uvm.edu/femc

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    CTD profiles collected in Lake Champlain (Vermont, New York, Quebec) during research and outreach trips on University of Vermont's R/V Melosira between 2012 and 2021.

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  • Jason Stockwell: dataset_eml_peopleprincipleinvestigator

  • Owen Deane: dataset_eml_peoplecontentprovider

  • Amelia McReynolds: dataset_eml_peoplecontentprovider

  • Silva Sundberg: dataset_eml_peoplecontentprovider

  • Ana Morales: dataset_eml_peopleprincipleinvestigator

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  • dissolved oxygen, freshwater, lake champlain, lakes, water column, water temperature,

Organizations

  • University of Vermont Rubenstein School of Environment and Natural Resources: lead

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  • dataset_eml_locationcords

    dataset_eml_datatableheader

    • dataset_eml_datatabletitle: Seabird CTD data R/V Melosira
    • dataset_eml_datatablestartdate: 2012-04-10
    • dataset_eml_datatableendate: 2021-08-05
    • dataset_eml_datatabledescription: This dataset includes 504 CTD profiles taken on Lake Champlain by University of Vermont researchers between April 2012 to August 2021. Data were collected with a Seabird SBE 19 Plus CTD deployed from the University's research vessel, the R/V Melosira. The dataset includes measurements of several physicochemical attributes, including conductivity, salinity, oxygen saturation, temperature, PAR/Irradiance, and fluorescence.

    • dataset_eml_datatablepurpose: CTD casts were taken for various projects being conducted by researchers at the Rubenstein Ecosystem Science lab, including bottom trawling, plankton sampling, and for educational purposes during University of Vermont classes.

    • dateset_eml_datatableshortname: 20251006163140_SeabirdCTDMelosira_2012-2021_v1.csv

    • dataset_eml_datatablephysicalobjectname: VMC.1826.4045

    • dataset_eml_datatabledatatype: mySQL
    • dataset_eml_datatablecitation: McReynolds, A., Sundberg, S. Deane, O., Morales, A., and Stockwell, J. (2026). Seabird CTD data: R/V Melosira 2012-2021. Forest Ecosystem Monitoring Cooperative. Available online at: https://www.uvm.edu/femc/data/archive/project/seabird-ctd-data-r-v-melosira

    • dataset_eml_datatableonlinedistribution: https://www.uvm.edu/femc/CI4/data/archive/project/seabird-ctd-data-r-v-melosira/dataset/seabird-ctd-data-rv-melosira

    dataset_eml_attributelistheader

      dataset_eml_attributelistname: file_name
      • dataset_eml_attributelistlabel: file_name
      • dataset_eml_attributelistdescription: File name to link the metadata & profile data extracted from each cast's raw data (.CNV) file
      • dataset_eml_attributeliststoragetype: text
      • dataset_eml_attributelistmeasurementtype: nominal
      dataset_eml_attributelistname: sampleID
      • dataset_eml_attributelistlabel: sampleID
      • dataset_eml_attributelistdescription: Unique sample ID based on the gear type, date, and CTD cast within that date in the format CTD_MMDDYYYY_#. Example: The third cast of the day on October 7, 2015 would have the sampleID CTD_10072015_3.
      • dataset_eml_attributeliststoragetype: text
      • dataset_eml_attributelistmeasurementtype: nominal
      dataset_eml_attributelistname: Year
      • dataset_eml_attributelistlabel: Year
      • dataset_eml_attributelistdescription: Year cast was taken
      • dataset_eml_attributeliststoragetype: date
      • dataset_eml_attributelistmeasurementtype: datetime
      • dataset_eml_attributelistformatstring: YYYY
      • dataset_eml_attributelistnumbertype: -1
      dataset_eml_attributelistname: date_start
      • dataset_eml_attributelistlabel: Date
      • dataset_eml_attributelistdescription: Date the CTD cast was taken
      • dataset_eml_attributeliststoragetype: date
      • dataset_eml_attributelistmeasurementtype: datetime
      • dataset_eml_attributelistformatstring: MM/DD/YY
      dataset_eml_attributelistname: Time
      • dataset_eml_attributelistlabel: Time
      • dataset_eml_attributelistdescription: Start time of cast, local time
      • dataset_eml_attributeliststoragetype: time
      • dataset_eml_attributelistmeasurementtype: datetime
      • dataset_eml_attributelistformatstring: hh:mm:ss
      dataset_eml_attributelistname: Basin
      • dataset_eml_attributelistlabel: Basin
      • dataset_eml_attributelistdescription: Lake Champlain major basin: Main Lake, Malletts Bay, or Inland Sea
      • dataset_eml_attributeliststoragetype: text
      • dataset_eml_attributelistmeasurementtype: nominal
      dataset_eml_attributelistname: Region
      • dataset_eml_attributelistlabel: Region
      • dataset_eml_attributelistdescription: Lake Champlain region based on coordinates and/or field notes: North, Central, or South Main Lake; Inland Sea; Malletts Bay
      • dataset_eml_attributeliststoragetype: text
      • dataset_eml_attributelistmeasurementtype: nominal
      dataset_eml_attributelistname: MajorManag
      • dataset_eml_attributelistlabel: Major management basin
      • dataset_eml_attributelistdescription: Numeric description of major basin in Lake Champlain
      • dataset_eml_attributeliststoragetype: text
      • dataset_eml_attributelistmeasurementtype: nominal
      dataset_eml_attributelistname: MinorManag
      • dataset_eml_attributelistlabel: Minor management basin
      • dataset_eml_attributelistdescription: Numeric description of minor basin (within major basin) in Lake Champlain
      • dataset_eml_attributeliststoragetype: text
      • dataset_eml_attributelistmeasurementtype: nominal
      dataset_eml_attributelistname: Lat_DD
      • dataset_eml_attributelistlabel: Latitude
      • dataset_eml_attributelistdescription: Latitude in decimal degrees (WGS84) for CTD cast; reported to 6 decimal places but may have been recorded to as few as 3 decimal places
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: interval
      • dataset_eml_attributelistprecision: 0.001
      • Unit: decimal degrees
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 44.144
        • dataset_eml_attributelistboumdsmaximum: 45.003
      dataset_eml_attributelistname: Long_DD
      • dataset_eml_attributelistlabel: Longitude
      • dataset_eml_attributelistdescription: Longitude in decimal degrees (WGS84) for CTD cast; reported to 6 decimal places but may have been recorded to as few as 3 decimal places
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistprecision: 0.001
      • Unit: decimal degrees
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: -73.414
        • dataset_eml_attributelistboumdsmaximum: -73.054
      dataset_eml_attributelistname: Estimated_Coordinates
      • dataset_eml_attributelistlabel: Estimated Coordinates
      • dataset_eml_attributelistdescription: A value of 1 indicates missing coordinates which were estimated based on site descriptions from R/V Melosira ship logs.
      • dataset_eml_attributeliststoragetype: int
      • dataset_eml_attributelistmeasurementtype: nominal
      dataset_eml_attributelistname: depFM
      • dataset_eml_attributelistlabel: Depth [fresh water, m]
      • dataset_eml_attributelistdescription: Depth in meters from the water surface. Measurements taken at negative depths (above water surface) have been removed.
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistprecision: 0.001
      • Unit: Meters
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 0
        • dataset_eml_attributelistboumdsmaximum: 122
      dataset_eml_attributelistname: c0mS_cm
      • dataset_eml_attributelistlabel: Conductivity [mS/cm]
      • dataset_eml_attributelistdescription: Conductivity measured in milliSiemens per centimeter
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistprecision: 0.000001
      • Unit: milliSiemens per centimeter
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 0
        • dataset_eml_attributelistboumdsmaximum: 0.938
      dataset_eml_attributelistname: dz_dtM
      • dataset_eml_attributelistlabel: Descent Rate [m/s]
      • dataset_eml_attributelistdescription: Rate CTD descended in water column
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistprecision: 0.001
      • Unit: meters per second
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 0
        • dataset_eml_attributelistboumdsmaximum: 1.56
      dataset_eml_attributelistname: timeS
      • dataset_eml_attributelistlabel: Time, Elapsed [seconds]
      • dataset_eml_attributelistdescription: Time in seconds since start of CTD cast
      • dataset_eml_attributeliststoragetype: time
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistprecision: 0.01
      • Unit: Seconds
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 0
        • dataset_eml_attributelistboumdsmaximum: 901.75
      dataset_eml_attributelistname: sal00
      • dataset_eml_attributelistlabel: Salinity, Practical [PSU]
      • dataset_eml_attributelistdescription: Salinity
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistprecision: 0.0001
      • Unit: practical salinity units
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 0
        • dataset_eml_attributelistboumdsmaximum: 0.74
      dataset_eml_attributelistname: oxsatML_L
      • dataset_eml_attributelistlabel: Oxygen Saturation, Weiss [mL/L]
      • dataset_eml_attributelistdescription: Recorded on SBE 43 Dissolved Oxygen Sensor
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistprecision: 0.00001
      • Unit: milliliters per liter
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 4.23181
        • dataset_eml_attributelistboumdsmaximum: 9.71769
      dataset_eml_attributelistname: tv290C
      • dataset_eml_attributelistlabel: Temperature [ITS-90, deg C]
      • dataset_eml_attributelistdescription: Water temperature in degrees Celsius
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: interval
      • dataset_eml_attributelistprecision: 0.0001
      • Unit: degrees Celsius
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 1.7846
        • dataset_eml_attributelistboumdsmaximum: 27.8008
      dataset_eml_attributelistname: par
      • dataset_eml_attributelistlabel: PAR/Irradiance, Biospherical/Licor
      • dataset_eml_attributelistdescription: Measured with LI-193 Spherical Quantum Sensor
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistprecision: 0.000001
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 0.026739
        • dataset_eml_attributelistboumdsmaximum: 4265.1
      dataset_eml_attributelistname: wetStar
      • dataset_eml_attributelistlabel: Fluorescence, WET Labs WETstar
      • dataset_eml_attributeliststoragetype: decimal
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistprecision: 0.0001
      • Unit: mg/m^3
      • dataset_eml_attributelistnumbertype: rational
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 0
        • dataset_eml_attributelistboumdsmaximum: 18.8606
      dataset_eml_attributelistname: Scan
      • dataset_eml_attributelistlabel: Scan
      • dataset_eml_attributelistdescription: Sequential scan number recorded during each cast, as an index for when each row of data was collected. Only present for some years.
      • dataset_eml_attributeliststoragetype: int
      • dataset_eml_attributelistmeasurementtype: ratio
      • dataset_eml_attributelistnumbertype: integer
        • dataset_eml_attributelistbounds:
        • dataset_eml_attributelistboundsminimum: 1
        • dataset_eml_attributelistboumdsmaximum: 999
      dataset_eml_attributelistname: flag
      • dataset_eml_attributelistlabel: Flag
      • dataset_eml_attributelistdescription: Measurements with data outside normal value ranges are flagged with 1.
      • dataset_eml_attributeliststoragetype: int
      • dataset_eml_attributelistmeasurementtype: nominal

    dataset_eml_methodsheader

    • dataset_eml_currentMethodsHeader
      • Collect profile data w/ SeaBird
        • dataset_eml_methoddescription: Deploy SeaBird CTD from ship
        • dataset_eml_methodsInstrumentation: SeaBird SBE 19Plusdataset_eml_methodsSoftware: Seaterm and SBEDataProcessing (free download from Seabird website)

      • Process data
        • dataset_eml_methoddescription: Process data by creating 1-m depth bins and saving as a .cnv file
        • dataset_eml_methodsInstrumentation: SeaBird SBE 19Plusdataset_eml_methodsSoftware: Seaterm and SBEDataProcessing (free download from Seabird website)

      • Check & combine data in R
        • dataset_eml_methoddescription: Import .cnv files, extract metadata, check water column data, and save combined, larger dataframes as .csv files
        • dataset_eml_methodsSoftware: R with 2 scripts

      • Upload data into Access
        • dataset_eml_methoddescription: Import .csv files into two Access tables: metadata (1 row per cast) and water column data (each measurement of the cast)
        • dataset_eml_methodsSoftware: Microsoft Access

      • Export full dataset into Excel
        • dataset_eml_methoddescription: In Access, we fully join metadata and profile data, where each single measurement is associated with metadata. Export into Excel for easier sharing.
        • dataset_eml_methodsSoftware: Microsoft Excel


    dataset_eml_samplingheader

    • dataset_eml_noSamplingEquipment

    dataset_eml_sitecharacteristicsheader

    • dataset_eml_sitecharacteristicsdescription: Lake Champlain