Asymmetric Linkage Disequilibrium

• asymLD R package

  • Click here for the asymLD R package on CRAN

  • Click here for the GitHub mirror of the asymLD R package

• Click here to see the input file formats

• The visualization described in Asymmetric linkage disequilibrium: Tools for assessing multiallelic LD by Single et al. can be run in R using the command below:

    shiny::runGitHub("ALD-vis", "rsingle", subdir = "inst/examples/shiny")
  

Citation: Thomson G, Single RM. Conditional Asymmetric Linkage Disequilibrium (ALD): Extending the Biallelic $r^2$ Measure. Genetics 198.1 (2014): 321-331.