Coupling self-organizing maps with a Naive Bayesian classifier: Stream classification studies using multiple assessment data


TitleCoupling self-organizing maps with a Naive Bayesian classifier: Stream classification studies using multiple assessment data
Publication TypeJournal Article
Year of Publication2013
AuthorsFytilis, N, Rizzo, DM
JournalWater Resources Research
Volume49
Issue11
Pagination7747 - 7762
Date Published2013/11
Abstract

Organizing or clustering data into natural groups is one of the most fundamental aspects
of understanding and mining information. The recent explosion in sensor networks and data
storage associated with hydrological monitoring has created a huge potential for automating
data analysis and classification of large, high-dimensional data sets. In this work, we
develop a new classification tool that couples a Na€ıve Bayesian classifier with a neural
network clustering algorithm (i.e., Kohonen Self-Organizing Map (SOM)). The combined
Bayesian-SOM algorithm reduces classification error by leveraging the Bayesian’s ability to
accommodate parameter uncertainty with the SOM’s ability to reduce high-dimensional
data to lower dimensions. The resulting algorithm is data-driven, nonparametric and is as
computationally efficient as a Na€ıve Bayesian classifier due to its parallel architecture. We
apply, evaluate and test the Bayesian-SOM network using two real-world hydrological data
sets. The first uses genetic data to classify the state of disease in native fish populations in
the upper Madison River, MT, USA. The second uses stream geomorphic and water quality
data measured at 2500 Vermont stream reaches to predict habitat conditions. The new
classification tool has substantial benefits over traditional classification methods due to its
ability to dynamically update prior information, assess the uncertainty/confidence of the
posterior probability values, and visualize both the input data and resulting probabilistic
clusters onto two-dimensional maps to better assess nonlinear mappings between the two.

URLhttp://onlinelibrary.wiley.com/doi/10.1002/2012WR013422/pdf
DOI10.1002/2012WR013422
Short TitleWater Resour. Res.
Refereed DesignationRefereed
Status: 
Published
Attributable Grant: 
RACC
Grant Year: 
Year3
Acknowledged VT EPSCoR: 
Ack-Yes