University of Vermont

Rubenstein Ecosystem Science Laboratory

Rubenstein Lab - publications

Publications Since 2011

In Review or Revision

Ball, S.C., T.B. Mihuc, L.W. Myers, and J.D. Stockwell. In review. Ten-fold decline in Mysis diluviana in Lake Champlain between 1975 and 2012. Journal of Great Lakes Research.

Binder, T.R., H.T. Thompson, A.M. Muir, S.C. Riley, J.E. Marsden, C.R. Bronte, and C.C. Krueger. 2014. In press. New insight into the spawning behavior of lake trout, Salvelinus namaycush, from a recovering population in the Laurentian Great Lakes. Ecology of Freshwater Fish vol :xx-xx.

Flinn, M.B., W.B. Bowden, B.J. Peterson, C. Luecke, A. Balser, A.R. Allen, and J.R. Larouche. In revision. The influence of lithology on physical, chemical, and biological characteristics of headwater streams in the Feniak Lake region, Noatak National Preserve, Alaska. Journal of the North American Benthological Society.

Ladago, B. J., J. E. Marsden, S. C. Riley, D. C. Honeyfield, D. E. Tillitt, J. Rinchard, J. L. Zajicek, and K. Kelsey. In review. Thiamine concentrations in lake trout and Atlantic salmon eggs from Lake Champlain decrease after alewife invasion. J. Great Lakes Res.

Lochet, A., B.J. Fryer , S.A. Ludsin, E.A. Howe, and J.E. Marsden. In press. Discriminating the natal origin of spawning adult sea lamprey (Petromyzon marinus): reevaluation of the statolith microchemistry approach. North American Journal of Fisheries Management vol:xx-xx.

Marsden, J. E., and M. J. Siefkes. In review. Control of the invasive sea lamprey. Ch. 11, In: M. Docker, ed.

Marsden, J. E., and H. Tobi. In press. Sculpin predation on lake trout eggs in interstices: skull compression as a novel foraging mechanism. Copeia.

Moriarty, P.E, C.J. Byron, A.J. Pershing,  J.D. Stockwell, and H. Xue. In review. Oceanographic influence on post-smolt Atlantic salmon (Salmo salar)migration in the Gulf of Maine. Journal of Fish Biology.

Snyder, L. and W.B. Bowden. In review. Nutrient dynamics in an oligotrophic arctic stream monitored in situ by wet chemistry methods. Water Resources Research.

Sotola, V.A., G. Maynard, E. Hayes-Pontius, T. Mihuc, M. Malchoff, and, J.E. Marsden. In press. Precision and bias of opercles to estimate ages of largemouth (Micropterus salmoides) and smallmouth bass (M. dolomieu) as compared to whole otoliths, dorsal spines, and scales. Northeastern Naturalist vol:xx-xx.

Sotola, V. A., L. Simard, and J. E. Marsden. In review. Evaluation of opercles as an alternative structure for age estimation of fishes in Lake Champlain. Trans Am. Fish. Soc.

Wlostowski, A.N., M.N. Gooseff, W. Wollheim, and W.B. Bowden. In review. Breakthrough curve decomposition: A conceptual framework for analyzing solute transport processes in rivers, independent of 1D numerical transport models. Water Resources Research.

2014

Binder, T.R., H.T. Thompson, A.M. Muir, S.C. Riley, J.E. Marsden, C.R. Bronte, and C.C. Krueger. 2014. New insight into the spawning behavior of lake trout, Salvelinus namaycush, from a recovering population in the Laurentian Great Lakes. Ecology of Freshwater Fish.

Byron, C.J., A.P. Pershing, J.D. Stockwell, X. Huijie, and J. Kocik. 2014. Migration model of post-smolt Atlantic salmon (Salmo salar) in the Gulf of Maine. Fisheries Oceanography 23:172-189.

Fitzsimons, J.D. and J.E. Marsden. 2014. Relationship between lake trout spawning, embryonic survival, and currents: A case of bet hedging in the face of environmental stochasticity? Journal of Great Lakes Research 40:92-101. pdf

Lochet, A., B.J. Fryer , S.A. Ludsin, E.A. Howe, and J.E. Marsden. In press. Discriminating the natal origin of spawning adult sea lamprey (Petromyzon marinus): reevaluation of the statolith microchemistry approach. North American Journal of Fisheries Management.

Janssen, J., J. E. Marsden, T. R. Hrabik, and J. D. Stockwell. 2014. Are the Laurentian Great Lakes great enough for Hjort? ICES Journal of Marine Science. doi: 10.1093/icesjms/fst220

Marsden, J. E., K. Kelsey, J. Riley, and J. Hatt. 2014. Evaluation of calcein for marking lake trout fry, and estimation of lake trout fry abundance on a spawning reef. N. Am. J. Fish. Manage. 34:270-275. pdf

Riley, S.C., T.R. Binder, N.J. Wattrus, M.D. Faust, J. Janssen, J. Menzies, J.E Marsden, M.P. Ebener, C.R. Bronte, J.X. He, T.R. Tucker, M.J. Hansen, H.T. Thompson, A.M. Muir, and C.C. Krueger. 2014. Lake trout in northern Lake Huron spawn on submerged drumlins. Journal of Great Lakes Research 40:415-420.

Sierszen, M.E., T.R. Hrabik, J.D. Stockwell, A.M. Cotter, J.C. Hoffman, and D.L. Yule. 2014. Depth gradients in food-web processes linking habitats in large lakes: Lake Superior as an exemplar ecosystem. Freshwater Biology. doi: 10.1111/fwb.12415

Stockwell, J.D., D.L. Yule, T.R. Hrabik, M.E. Sierszen, and E.J. Isaac. 2014. Habitat coupling in a large lake system: delivery of an energy subsidy by an offshore planktivore to the nearshore zone of Lake Superior. Freshwater Biology 59:1197-1212.

Yurista, P.M., D.L. Yule, M. Balge, J.D. VanAlstine, J.A. Thompson, A.E. Gamble, T.R. Hrabik, J.R. Kelly, J.D. Stockwell, and M.R. Vinson. 2014. A new look at the Lake Superior biomass size-spectrum. Canadian Journal of Fisheries and Aquatic Sciences. 10.1139/cjfas-2013-0596.

2013

Bowden, W.B., B.J. Peterson, L.A. Deegan, A.D. Huryn, J.P. Benstead, H. Golden, M. Kendrick, S.M. Parker*, E. Schuett, J. Valino, and J.E. Hobbie. In press. Ecology of streams of the Toolik region. Chapter 7 in J.E. Hobbie and G. Kling, Arctic LTER Synthesis Book. Oxford University Press, New York.

Chichakly, K., W.B. Bowden, M. Eppstein. 2013. Minimization of cost, sediment load, and sensitivity to climate change in a watershed management application. Environmental Modeling and Software 50:158-168.

Cronin-Fine, L., J.D. Stockwell, Z.T. Whitener, E.M. Labbe, T.V. Willis, and K.A. Wilson. 2013. Application of morphometric analysis to identify alewife stock structure in the Gulf of Maine. Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science 5:11-20. pdf

Herbst, S.J., J.E. Marsden, and B.J. Lantry. 2013. Lake whitefish diet, condition, and energy density in Lake Champlain and the lower four Great Lakes following dreissenid invasions. Transactions of the American Fisheries Society 142:388-398.

Howe, E. A., A. Lochet, C. P. Hand, J. E. Marsden, S. A. Ludsin, and B. J. Fryer. 2013. Tributary contributions to the parasitic and spawning adult population of sea lamprey (Petromyzon marinus) in Lake Champlain using elemental signatures. Journal of Great Lakes Research 39:239-246.

Lochet, A., J.E. Marsden, B. J. Fryer and S. A. Ludsin. In press. Instability of statolith elemental signatures revealed in newly-metamorphosed sea lamprey (Petromyzon marinus). Canadian Journal of Fisheries and Aquatic Sciences xx:xxx-xxx.

Marsden, J. E., K. Kelsey, J. Riley, and J. Hatt.  In press.  Evaluation of calcein for marking lake trout fry, and estimation of lake trout fry abundance on a spawning reef. North American Journal of Fisheries Management xx:xxx-xxx.

Marsden, J.E., P. Stangel, and A. Shambaugh. 2013. Zebra mussels in Lake Champlain: a sixteen-year monitoring database. Chapter 2, In: T. Nalepa and D. Schloesser, Quagga and Zebra Mussels: Biology, Impacts, and Control, 2nd ed. CRC Press.

Maynard, G.A., T.B. Mihuc, R.E. Schultz, V. Alex Sotola, A.J. Reyes, M.H. Malchoff, and D.E. Garneau. 2013. Use of external indicators to evaluate stress of largemouth (Micropterus salmoides) and smallmouth (M. dolmieu) bass tournaments. The Open Fish Science Journal 6:78-86.

Schuur, E.A.G., B.W. Abbott, W.B. Bowden, plus 39 co-authors. 2013. Expert assessment of vulnerability of permafrost carbon to climate change. Climatic Change:1-16.

2012

Bowden, W.B., J.R. Larouche, A.R. Pearce, B.T. Crosby, K. Krieger, M.B. Flinn, J. Kampman, M.N. Gooseff, S.E. Godsey, J.B. Jones, B.W. Abbott, M.T. Jorgenson, G.W. Kling, M. Mack, E.A.G. Schuur, A.F. Baron, and E.B. Rastetter. 2012. An integrated assessment of the influences of upland thermal-erosional features on landscape structure and function in the foothills of the Brooks Range, Alaska. In: Proceedings of the Tenth International Conference on Permafrost. Edited by K.M. Hinkel. Salekhard, Russia, 24-29 June, 2012. Pages 61-66.

Facey, D.E., J.E. Marsden, T.B. Mihuc, and E.A. Howe. 2012. Lake Champlain 2010: A summary of recent research and monitoring initiatives. Journal of Great Lakes Research 38 (Suppl. 1):1-5.

Fitzgerald, E., W.B. Bowden, and M. Kline. Urban impacts on streams are scale-dependent with nonlinear influences on their physical and biotic recovery in Vermont, United States. Journal of the American Water Resources Association 48:679-697.

Flinn, M.B., W.B. Bowden, A.W. Balser, J.B. Jones, and M.N. Gooseff. 2012. Soil and water chemistry characteristics of thermo-erosional features in the western Noatak River basin, Alaska, USA. In: Proceedings of the Tenth International Conference on Permafrost. Edited by K.M. Hinkel. Salekhard, Russia, 24-29 June, 2012. Pages 101-106.

Gorman, O.T., D.L. Yule, and J.D. Stockwell. 2012a. Habitat use by fishes of Lake Superior. I. Diel patterns of habitat use in nearshore and offshore waters of the Apostle Islands region. Aquatic Ecosystem Health and Management 15:333-354.

Gorman, O.T., D.L. Yule, and J.D. Stockwell. 2012b. Habitat use by fishes of Lake Superior. II.  Consequences of diel habitat use for habitat linkages and habitat coupling in nearshore and offshore waters. Aquatic Ecosystem Health and Management 15:355-368.

Howe, E.A., J.E. Marsdenᶲ, T.M. Donovan and R.H. Lamberson. 2012. A life cycle approach to modeling sea lamprey in the Lake Champlain basin. Journal of Great Lakes Research 38 (Suppl. 1):101-114.

Isaac, E.J., T.R. Hrabik, J.D. Stockwell, and A.E. Gamble. 2012. The selection of prey by the Lake Superior fish community. Journal of Great Lakes Research38:326-335. pdf

Larouche, J.R., W.B. Bowden, R. Giordano, M.B. Flinn, and B.C. Crump. 2012. Microbial biogeography of streams in the Feniak Lake region, Noatak National Preserve, Alaska: Exploring influences of lithology and habitat. Frontiers in Microbiology 3:article 309. doi: 10.3389/fmicb.2012.00309.

Stockwell, J.D., T.C. Weber, A.J. Baukus, and J.M. Jech. 2012. On the use of omni-directional sonars and downward-looking echosounders to assess pelagic fish distributions during and after midwater trawling. ICES Journal of Marine Science 70:196-203. pdf

Thurow, R.F., C.A. Dolloff, and J.E. Marsden. 2012. Visual observation of fish and aquatic habitat. Chapter 17, In: A.V. Zale, D.L. Parrish, and T.M .Sutton, eds., Fisheries Techniques 3rd ed., American Fisheries Society, Bethesda, MD.

2011

Ahrenstorff, T.D., T.R. Hrabik, J.D. Stockwell, D.L. Yule, and G.G. Sass. 2011. Seasonally dynamic diel vertical migrations of mysis (Mysis relicta), coregonines (Coregonus spp.), and siscowet lake trout (Salvelinus namaycush) in the pelagia of Western Lake Superior. Transactions of the American Fisheries Society 140:1504-1520.

Gamble, A. E., T. R. Hrabik, J. D. Stockwell, and D. L. Yule. 2011a. Trophic connections in Lake Superior Part I: the offshore fish community. Journal of Great Lakes Research 37:541-549. pdf

Gamble, A. E., T. R. Hrabik, D. L. Yule, and J. D. Stockwell. 2011b. Trophic connections in Lake Superior Part II: the nearshore fish community. Journal of Great Lakes Research37:550-560. pdf

Herbst, S.J., J.E. Marsden, and S.J. Smith. 2011. Lake whitefish in Lake Champlain after commercial fishery closure and ecosystem changes. North American Journal of Fisheries Management 31:1106-1115.

Herbst, S.J. and J.E. Marsden. 2011.  Comparison of precision and bias of scale, fin ray, and otolith age estimates for lake whitefish in Lake Champlain. Journal of Great Lakes Research 37:386-389.

Jensen, O.P., S. Hansson, T. Didrikas, J. D. Stockwell, T.R. Hrabik, T. Axenrot, and J.F. Kitchell. 2011. Foraging, bioenergetic, and predation constraints on diel vertical migration: field observations and modeling of reverse migration by Baltic Sea young-of-year herring (Clupea harengus). Journal of Fish Biology 78:449-465.

Kelly, J.R., P.M. Yurista, S.E. Miller, A.C. Cotter, T.C. Corry, J.S. Scharold, M.E. Siersen, E.J. Isaac, and J.D. Stockwell. 2011. Challenges to Lake Superior’s condition, assessment, and management:  A few observations across a generation of change. Aquatic Ecosystem Health and Management 14:332-344.

Prowse, T., K. Alfredsen, S. Beltaos, B.R. Bonsal, W.B. Bowden, C.R. Duguay, A. Korhola, J. McNamara, W.F. Vincent, V. Vuglinsky, K.M. Walter Anthony, and G.A. Weyhenmeyer. 2011. Effects of changes in Arctic lake and river ice. Ambio 40:63–74.

Prowse, T., K. Alfredsen, S. Beltaos, B. Bonsal, C. Duguay, A. Korhola, J. McNamara, W.F. Vincent, V. Vuglinsky, G. Weyhenmeyer, K. Walter Anthony, W.B. Bowden, V. Buzin, Y. Dibike, N. Gantner, L. Hinzman, L. Lia, T. Ouarda, R. Pienitz, J.D. Reist, M. Stickler, J. Weckström, and F. Wrona.  2011. Changing lake and river ice regimes: trends, effects and implications.  Chapter 6.  In: Snow, water, ice, and Permafrost in the Arctic.  An assessment report from the Arctic Monitoring and Assessment Programme (AMAP).  Published by the AMAP Secretariat, Arctic Council, Oslo. ISBN ISBN 978-82-7971-071-4. Xii+538pp.

Riley, J.W., N.F. Thompson, J.E. Marsden, and J. Janssen.  2011.  Development of two new sampling techniques for assessing lake trout reproduction in deep water.  North American Journal of Fisheries Management 30:1571-1581.

Schuur, E.A.G., B. Abbott, and the Permafrost Carbon Network (including W.B. Bowden). 2011. High risk of permafrost thaw. Nature (Comment) 480:32-33.

Last modified July 21 2014 11:27 AM