CEMS Scholarly Contributions 2007-08

Research and scholarship by CEMS faculty from January 2007 through January 2008 includes over 300 contributions to books, book chapters, refereed journal articles, non-refereed journal articles, conference proceedings, and other intellectual contributions (software, technical reports, etc.).

CEMS is comprised of the Department of Computer Science, Department of Mathematics and Statistics, and School of Engineering.

Books

Mathematics and Statistics

• Colbourn, C. J., Dinitz, J. (2007). Handbook of Combinatorial Designs, 2nd Edition. Boca Raton, FL: Chapman and Hall/CRC. www.cems.uvm.edu/~dinitz/hcd.html
• Wilson, M. (2007). Weighted Littlewood-Paley Theory and Exponential-Square Integrability (Lecture Notes in Mathematics #1924). New York, Berlin: Springer. www.springer.com
• Skorobogatiy, M., Yang, J. (2008). Fundamentals of Photonic-Crystal Guiding. Cambridge: Cambridge University Press.

• Arslan, A. (2007). In Teofilo F. Gonzalez (Ed.), Dynamic and fractional programming approximation algorithms for local alignment with constraints (vol. 13, pp. 15). Chapman & Hall/CRC in the Computer & Information Science Series. www.crcpress.com
• Arslan, A. In John Wang (Ed.), Guided Sequence Alignment. Idea Group Reference.

Mathematics and Statistics

• Archdeacon, D. Problems in topological graph theory.
• Dinitz, J. (2007). In C.J. Colbourn and J.H. Dinitz (Ed.), Ten Chapters in "Handbook of Combinatorial Designs" (pp. 130 total pages). Boca Raton, FL: Chapman and Hall/CRC. www.cems.uvm.edu/~dinitz/hcd.html
• Stevens, S., Lakin, W., Penar, P. (2007). In Carlos Brebbia (Ed.), Modeling Pathological Intracranial Pressure Wavs in Ideopathic Intracranial Hypertension (pp. 191-200). New Forest: WIT Press.
• Lakin, W., Stevens, S., Thakore, N., Penar, P. (2007). In Carlos Brebbia (Ed.), A Modeling Study of Ideopathic Intracranial Hypertension: Etiology, Diagnosis, and Treatment (pp. 179-190). New Forest: WIT Press.
• Lakin, W., Stevens, S. (2007). In Hosking and Ventorino (Ed.), Modeling Pathological Intracranial Pressure Wavs in Ideopathic Intracranial Hypertension (pp. 211-227). Basel: Birkhauser.
• Single, R., Meyer, D., Mack, S. J., Lancaster, A., Nelson, M. P., Fernández-Viña, M., Erlich, H., Thomson, G. In J.A. Hansen (Ed.), Haplotype Frequencies and Linkage Disequilibrium among classical HLA genes (vol. 1, pp. 705-746). Immunobiology of the Human MHC. Proceedings of the 13th International Histocompatibility Workshop and Conference. Seattle: IHWG Press.
• Single, R., Malkki, M., Thomson, G., Mather, K. A., Carrington, M., Petersdorf, E. In J.A. Hansen (Ed.), Linkage disequilibrium and HLA-A: B: DRB1 haplotype probabilities for Class I, II, III microsatellite markers in unrelated donor hematopoietic stem cell transplantation (vol. 1, pp. 1372-1377). Immunobiology of the Human MHC. Proceedings of the 13th International Histocompatibility Workshop and Conference. Seattle: IHWG Press.
• Single, R., Mack, S. J., Sanchez-Mazas, A., Meyer, D., Single, R. M., Tsai, Y., Erlich, H. A. In J.A. Hansen (Ed.), Methods used in the generation and preparation of data for analysis in the 13th International Histocompatibility Workshop (vol. 1, pp. 564-579). Immunobiology of the Human MHC. Proceedings of the 13th International Histocompatibility Workshop and Conference. Seattle: IHWG Press.
• Single, R., Meyer, D., Single, R. M., Mack, S. J., Lancaster, A., Nelson, M. P., Fernández-Viña, M., Erlich, H., Thomson, G. In J.A. Hansen (Ed.), Single locus polymorphism of classical HLA genes (vol. 1, pp. 653-704). Immunobiology of the Human MHC. Proceedings of the 13th International Histocompatibility Workshop and Conference. Seattle: IHWG Press.
• Single, R., Lancaster, A., Nelson, M. P., Single, R. M., Meyer, D., Thomson, G. In J.A. Hansen (Ed.), Software framework for the Biostatistics Core (vol. 1, pp. 510-517). Immunobiology of the Human MHC. Proceedings of the 13th International Histocompatibility Workshop and Conference. Seattle: IHWG Press.
• Single, R., Mickelson, E., Damodaran, A., He, P., Malkki, M., Smith, A., Petersdorf, E., Carrington, M., Harding, A., Cambon-Thomsen, A., Gagne, K., Bignon, J., Gebuhner, L., Dubois, V., Dormoy, A., Tongio, M., Bois, M., Concannon, P., Martin, B., Lie, B., Thorsby, E., Bétard, C., Lathrop, M., Mignot, E., Schroeder, M., Reveille, J., Feolo, M., Inoko, H., Thomson, G., Single, R. M., Hansen, J. A., on behalf of the IHWG Microsatellite Project and participating laboratories In J.A. Hansen (Ed.), Standardization of Microsatellite Data: Comparative Analysis of Results from 13th IHWS Participating Laboratories and Establishment of a Microsatellite Reference Panel and Standard Nomenclature (vol. 1, pp. 1277-1314). Immunobiology of the Human MHC. Proceedings of the 13th International Histocompatibility Workshop and Conference. Seattle: IHWG Press.
• Single, R., Thomson, G., Hongzhe, L., Dorman, J., Lie, B. A., Mignot, E., Steenkiste, A., Thorsby, E., Akey, J., McWeeney, S., Single, R. M. In J.A. Hansen (Ed.), Statistical approaches for analyses of HLA-associated and other complex diseases (vol. 1, pp. 782-787). Immunobiology of the Human MHC. Proceedings of the 13th International Histocompatibility Workshop and Conference. Seattle: IHWG Press.
• Single, R., Meyer, D., Thomson, G. In J.A. Hansen (Ed.), Statistical methods for analysis of population genetic data (vol. 1, pp. 518-522). Immunobiology of the Human MHC. Proceedings of the 13th International Histocompatibility Workshop and Conference. Seattle: IHWG Press.
• Shi, Z., Yang, J. In D. Hsieh (Ed.), New Solitary Wave Structures in Two-Dimensional Periodic Media (pp. 211-226). Singapore: World Scientific (2007).
• Chen, Z., Yang, J. In H.A. Abdeldayem and D.O. Frazier (Ed.), Optically-induced reconfigurable photonic lattices for linear and nonlinear control of light. Kerala: Research Signpost publisher (2008).

School of Engineering

• Cross, M. W., Varhue, W., Hitt, D. Fabrication of Self-Assembled Catalytic Nanostructures. Encyclopedia of Microfluidics & Nanofluidics.
• Louisos, W. F., Hitt, D. Supersonic Micronozzles. Encyclopedia of Microfluidics & Nanofluidics.

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Refereed Journal Articles

Computer Science

• Arslan, A. (2007). Regular expression constrained sequence alignment. Journal of Discrete Algorithms, 5(4), 647-661. www.elsevier.com/wps/find/journaldescription.cws_home/672711/description?navopenmenu=-2
• Arslan, A. An algorithm with linear expected running time for string editing with substitutions and substring reversals. To appear in Information Processing Letters, 6. www.elsevier.com/wps/find/journaldescription.cws_home/505612/description?navopenmenu=-2
• Arslan, A. Efficient approximate dictionary look-up for long words over small alphabets. Pattern Recognition/Elsevier. www.elsevier.com/wps/find/journaldescription.cws_home/328/description?navopenmenu=-2
• Bongard, J. (2007). Automated reverse engineering of nonlinear dynamical systems. Proceedings of the National Academy of Science, 104(24), 9943-9948.
• Eppstein, M., Payne, J. L., White, B. C., Moore, J. H. (2007). Genomic mining for complex disease traits with 'Random Chemistry'. Genetic Programming and Evolvable Machines (special issue on Medical Applications), 8, 395-411.
• Eppstein, M., Molofsky, J. (2007). Invasiveness in plant communities with feedbacks. Ecology Letters, 10, 253-263.
• Zhu, B., Eppstein, M., Sevick-Muraca, E. M., Godavarty, A. (2007). Noise pre-filtering techniques in fluorescence-enhanced optical tomography. Optics Express, 15(18), 11285-11300.
• Madin, J., Bowersb, S., Schildhauer, M., Krivov, S., Pennington, D., Villa, F. (2007). An ontology for Describing and Synthesizing Ecological Observation Data. Ecological Informatics, 2, 279-296.
• Krivov, S. (2007). GrOWL: A Tool for Visualization and Editing of OWL Ontologies. Web Semantics: Science, Services and Agents on the World Wide Web, 5(2), 54-57.
• Villa, F., Ceroni, M., Krivov, S. (2007). Intelligent databases assist transparent and sound economic valuation of ecosystem services. Environmental Management, 39(6), 887-899.
• Pennington, D., Villa, F., Athanasiadis, I., Madin, J., Schildauer, M., Bowers, S., Krivov, S. (2008). Indirectly-Driven Knowledge Modeling in Ecology. To appear in International Journal of Metadata, Semantics and Ontologies.
• Woo, J., Lee, B., Lee, M., Whang, K., Loh, W. (2007). Temporal Aggregation Using a Multi-dimensional Index. Journal of Database Management, 18(2), 62-80. www.igi-pub.com/journals/details.asp?id=198
• Fuchs, D., He, Z., Lee, B. (2007). Compressed Histograms with Arbitrary Bucket Layouts for Selectivity Estimation. Information Sciences, 177(3), 680-702. www.elsevier.com/wps/find/journaldescription.cws_home/505730/description#description
• Jiang, S., Lee, B., He, Z. (2007). The Cost Modeling of Spatial Operators Using Nonparametric Regression. Information Sciences, 177(2), 607-631. www.elsevier.com/wps/find/journaldescription.cws_home/505730/description#description
• He, Z., Lee, B., Wang, X. Sean. Aggregation in Sensor Networks with a User-Provided Quality of Service Goal. To appear in Information Sciences, doi:10.1016/j.ins.2008.01.003. www.elsevier.com/wps/find/journaldescription.cws_home/505730/description#description
• He, Z., Lee, B., Wang, X. Sean. Proactive and Reactive Multi-dimensional Histograms for Selectivity Estimation. To appear in Journal of Systems and Software. www.elsevier.com/wps/find/journaldescription.cws_home/505732/description?navopenmenu=-2
• Ling, A. On the existence of well-ordered Steiner triple systems. To appear in Ars Combinatoria.
• Ling, A., Chee, Y.M. On extremal k-graphs without repeated copies of 2-intersecting edges. SIAM J. on Discrete Math., 21(233-242).
• Ling, A., Chee, Y.M., Dau, S.H., Ling, S. The sizes of optimal q-ary codes of weight three and distances four: a complete solution. To appear in IEEE Tran. on Information Theory.
• Ling, A., Chee, Y.M., Shen, H. Fine intersection of STS. To appear in Graph and Combinatorics.
• Ling, A., Chee, Y.M., Shen, H., Ling, S. The PBD-closure of nonzero constant composition codes. IEEE Tran. on Inform. Theory, 53, 2685-2692.
• Ling, A., Colbourn, C.J., Cohen, M.B. Construction Strength three covering arrays with augmented annealing. To appear in Discrete Math..
• Ling, A., Colbourn, C.J., Ge, G. Graphs designs for the eight-edge five-vertices graphs. To appear in Discrete Math..
• Ling, A., Colbourn, C.J., Quattrocchi, Q. Minimum embedding of Steiner triple system into K4-e designs I. To appear in Discrete Math..
• Ling, A., Colbourn, C.J., Quattrocchi, G. Minimum embeddings of Steiner triple systems into K4-e designs II. To appear in Discrete Math..
• Ling, A., Dukes, P. Edge-coloring of K_{n,n} with no long two-colored cycles. To appear in Combinatorica.
• Ling, A., Dukes, P. Existence of balanced sample plan avoiding adjacent distances. To appear in Metrika.
• Ling, A., Dukes, P. Linear programming bound for balanced arrays. J. Stat. Plann. Stat. Infer., 137, 324-330.
• Ling, A., Dukes, P. On the asymptotic existence of resolvable graph designs. To appear in Canadian Math. Bulletin.
• Ling, A., Ge, G. On the existence of K5\e designs. To appear in SIAM J. Discrete Math..
• Ling, A., Ge, G. On the existence of resolvable K4-e designs. J. of Combinatorial Designs, 502-510.
• Ling, A., Ge, G., Greig, M., Rees, R.S. Resolvable balanced block designs with subdesigns of block size 4. To appear in Discrete Math..
• Ling, A., Ge, G., Miao, Y. A systematic constructor for Radar Arrays. To appear in IEEE Trans. on Information Theory.
• Dinitz, J., Ling, A. A note on extremal CURDs. To appear in Journal of Combinatorial Designs.
• Dinitz, J., Ling, A. The Hamilton-Waterloo problem with triangle-factors and Hamilton cycles: The case n =3 (mod 18). To appear in Journal of Combinatorial Mathematics and Combinatorial Computing.
• Dinitz, J., Ling, A., Danziger, P. Maximum uniformly resolvable designs with block sizes 2 and 4. To appear in Discrete Mathematics.
• Dinitz, J., Ling, A., Stinson, D. (2007). Perfect hash families from transversal designs. Australasian Journal of Combinatorics/ Combinatorial Mathematics Society of Australasia, 37, 233-242. ajc.maths.uq.edu.au/
• Costanza, R., Fisher, B., Ali, S., Beer, C., Bond, L., Boumans, R., Danigelis, N. L., Dickinson, J., Elliott, C., Farley, J., Gayer, D., Glenn, L. M., Hudspeth, T., Mahoney, D., McCahill, L., McIntosh, B., Reed, B., Rizvi, S. A., Rizzo, D., Simpatico, T., Snapp, R. (2008). An integrative approach to quality of life measurement, research, and policy. Surveys and Perspectives Integrating Environment and Society, 1(1), 11-15. www.surv-perspect-integr-environ-soc.net/1/issue1.html
• Costanza, R., Fisher, B., Ali, S., Beer, C., Bond, L., Boumans, R., Danigelis, N. L., Dickinson, J., Elliott, C., Farley, J., Gayer, D., Glenn, L. M., Hudspeth, T., Mahoney, D., McCahill, L., McIntosh, B., Reed, B., Rizvi, S. A., Rizzo, D., Simpatico, T., Snapp, R. (2007). Quality of Life: An Approach Integrating Opportunities, Human Needs, and Subjective Well-Being. Ecological Economics, 61, 267-276. www.elsevier.com/wps/find/journaldescription.cws_home/505730/description#description
• Skalka, C., Wang, X. Sean, Chapin, P. Risk Management for Distributed Authorization. 15(4), 447-489.
• Skalka, C., Smith, S., Van Horn, D. Types and Trace Effects of Higher-Order Programs. Journal of Functional Programming, 18(2), 179-249.M
• Chapin, P., Skalka, C., Wang, X. Sean. Authorization in Trust Management: Features and Foundations. To appear in ACM Computing Surveys.
• Skalka, C. Types and Trace Effects for Object Orientation. To appear in Journal of Higher Order and Symbolic Computation.
• Chen, G., Wu, X., Zhu, X. (2008). Mining sequential patterns across time sequences. New Generation Computing, 26(1), 75-96.
• Gao, J., Xie, Z., Wu, X. (2007). Generic object recognition with regional statistical models and layer joint boosting. Pattern Recognition Letters, 28(16), 2227-2237.
• Hu, X., Li, P., Wu, X., Wu, G. (2007). A semi-random multiple decision-tree algorithm for mining data streams. Journal of Computer Science and Technology, 22(5), 711-724.
• Mao, G., Wu, X., Zhu, X., Chen, G., Liu, C. (2007). Mining maximal frequent itemsets from data streams. Journal of Information Science, 33(3), 251-262.
• Tao, D., Li, X., Wu, X., Hu, W., Maybank, S. (2007). Supervised tensor learning. Knowledge and Information Systems, 13(1), 1-42.
• Tao, D., Li, X., Wu, X., Maybank, S. (2007). General tensor discriminant analysis and Gabor features for gait recognition. IEEE Transactions on Pattern Analysis and Machine Intelligence, 29(10), 1700-1715.
• Tao, D., Li, X., Wu, X., Maybank, S. J. (2008). Tensor rank one discriminant analysis. Neurocomputing, 71(10), 1866-1882.
• Tao, D., Song, M., Li, X., Shen, J., Sun, J., Wu, X., Faloutsos, C., Maybank, S. J. (2008). Bayesian tensor approach for 3d face modeling. IEEE Transactions on Circuits and Systems for Video Technology, 18(10), 1397-1410.
• Wu, X., Kumar, V., Quinlan, J. R., Ghosh, J., Yang, Q., Motoda, H., Mclachlan, G. J., Ng, A., Liu, B., Yu, P. S., Zhou, Z. H., Steinbach, M., Hand, D. J., Steinberg, D. (2008). Top 10 algorithms in data mining. Knowledge and Information Systems, 14(1), 1-37.
• Wu, X., Zhu, X. (2008). Mining with noise knowledge: Error-aware data mining. IEEE Transactions on System, Man and Cybernetics, Part A, 38(4), 917-932.
• Xue, F., Zhang, Y.-S., Jiang, J.-L., Hu, M., Wu, X., Wang, R.-G. (2007). Real-time texture synthesis using s-tile set. Journal of Computer Science and Technology, 22(4), 590-596.
• Zhang, S., Wu, X., Zhang, C., Lu, J. (2008). Computing the minimum-support for mining frequent patterns. Knowledge and Information Systems, 15(2), 233-257.

Mathematics and Statistics

• Aleong, C., Aleong, J. A Meta-analysis of the Content and Effectiveness of Training Programs for Federal and State Transportation Employees. Abstract, JSM, Salt Lake City, August 2007..
• Aleong, C., Aleong, J. Are Summer Institutes Funded by FHWA and State Departments of Transportation Effective? College Teaching Methods & Styles Journal.
• Aleong, J. Climate Change Models and its Impact. Abstract, JSM, Salt Lake City, August 2007..
• Aleong, C., Aleong, J. Harmonization of Data: Lessons to be Learnt from Major International Organizations. Caribbean Dialogue, 10(3-4), 1-15.
• Aleong, C., Aleong, J. Teaching Science and Engineering-Related Topics Using Experiential Methods: An Action-Research Study. Journal of College Teaching & Learning, 4(2), 13-22.
• Archdeacon, D. How to exhibit a toroidal map. Discrete and Computational Geometry, 38(3), 573-594.
• Bentil, D., Ellingwood, C., Osei, B., Hoffmann, J. (2007). Analysis of a Schnute postulate-based Unified Growth Model in Evolutionary Computations. BioSystems, 90, 467-474. www.elsevier.com/locate/bio
• Kien, C. L., Blauwiekel, R., Bunn, J., Jetton, T., Frankel, W. L., Holst, J. J. (2007). Cecal infusion of butyrate increases intestinal cell proliferation in piglets. Journal of Nutrition, 137(4), 916-922.
• Muss, H. B., Bunn, J., Crocker, A., Plaut, K., Koh, J., Heintz, N., Rincon, M., Weaver, D., Tam, D., Beatty, B., Kaufman, P., Donovan, M., Verbel, D., Weiss, L. (2007). Cyclin D-1, Interleukin-6, HER-2/neu, Transforming Growth Factor Receptor-II and Prediction of Relapse in Women with Early Stage, Hormone Receptor-Positive Breast Cancer Treated with Tamoxifen. Breast Journal, 13(4), 329-439.
• Kien, C. L., Blauwiekel, R., Williams, C. H., Bunn, J., Buddington, R. K. (2007). Lactulose feeding lowers cecal densities of Clostridia in piglets. Journal of Parenteral and Enteral Nutrition, 31(3), 194-198.
• Flynn, B. S., Worden, J. K., Bunn, J., Dorwaldt, A. L., Connolly, S. W., Ashikaga, T. (2007). Youth audience segmentation strategies for smoking-prevention mass media campaigns based on message appeal. Health Education and Behavior, 34(4), 578-593.
• Bunn, J., Solomon, S. E., Miller, C., Forehand, R. (2007). Measurement of stigma in people with HIV: A re-examination of the HIV Stigma Scale. AIDS Education and Prevention, 19(3), 198-208.
• Worth, S. G.A., Henry, S. M., Bunn, J. (2007). Real-time ultrasound feedback and abdominal hollowing exercises for people with back pain. New Zealand Journal of Physiotherapy, 35(1), 4-11.
• Ades, P. A., Savage, P. D., Toth, M. J., Schneider, D. J., Audelin, M. C., Bunn, J., Ludlow, M. (2008). The influence of obesity and consequent insulin resistance on coronary risk factors in medically treated patients with coronary disease. To appear in International Journal of Obesity, 32(6), 967-974.
• Jones, S., Henry, S. M., Raasch, C., Hitt, J., Bunn, J. (2008). Responses to multi-directional surface translations involve re-weighting of proximal vs. distal strategies to maintain upright posture. To appear in Experimental Brain Research, 187(3), 407-417.
• Gonzalez, A., Miller, C. T., Solomon, S. E., Bunn, J., Cassidy, D. G. Size matters: community size, HIV stigma, and gender differences. To appear in AIDS and Behavior.
• Bunn, J., Solomon, S. E., Varni, S. E., Miller, C. T., Forehand, R. L., Ashikaga, T. (2008). Urban-rural differences in motivation to control prejudice toward people with HIV/AIDS: the impact of perceived identifiability in the community. To appear in Journal of Rural Health.
• Kien, C. L., Bunn, J. Effects of palmitate and oleate on the respiratory quotient during acute feeding. To appear in Obesity.
• Kien, C. L., Bunn, J. Gender alters the effects of palmitate and oleate on fat oxidation and energy expenditure. To appear in Obesity.
• Solomon, L. J., Bunn, J., Flynn, B. S., Pirie, P. L., Worden, J. K., Ashikaga, T. Mass media for smoking cessation in adolescents. To appear in Health Education and Behavior.
• Burgmeier, J., Blifford, I. H. Computer Cinematography for Portrayal of Large-Scale Fallout, Atmospheric Environment, 4, pp. 187-197 (1970). Atmospheric Environment, 4(1970), 187-197.
• Long, R., Buzas, J. Comparing the effectiveness of scat detector dogs, remote cameras, and hair snares for surveying carnivores. Journal of wildlife management, 71(6), 2018-2025.
• Long, R., Buzas, J. Effectivenes of scat detector dogs for detecting forest carnivores. Journal of wildlife management, 71(6), 2007-2017.
• Osler, T., Glance, L., Buzas, J. Improved Mortality Prediction Based Upon Anatomic Trauma Description. To appear in annals of surgery.
• Vossen, C. Y., Callas, P., Hasstedt, S. J., Long, G. L., Rosendaal, F. R., Bovill, E. G. (2007). A genetic basis for the interrelation of coagulation factors. Journal of Thrombosis and Haemostasis, 5, 1930-1935.
• Kaminsky, D. A., Whitman, T., Callas, P. (2007). DLCO versus DLCO/VA as predictors of pulmonary gas exchange. Respiratory Medicine, 101, 989-994.
• Bertsch, T. F., Callas, P., Rubin, A., Caputo, M. P., Ricci, M. A. (2007). Effectiveness of lectures attended via interactive videoconferencing versus in-person in preparing third year internal medicine clerkship students for Clinical Practice Examinations (CPX). Teaching and Learning in Medicine, 19, 4-8.
• Hasstedt, S. J., Scott, B. T., Rosendaal, F. R., Callas, P., Vossen, C. Y., Long, G. L., Bovill, E. G. (2007). Exclusion of the α2 subunit of platelet-activating factor acetylhydrolase 1b (PAFAH1B2) as a prothrombotic gene in a protein C-deficient kindred and a population-based case-control sample. Thrombosis and Haemostasis, 98, 587-592.
• Peters, E. N., Hughes, J. R., Callas, P., Solomon, L. J. (2007). Goals indicate motivation to quit smoking. Addiction, 102, 1158-1163.
• Casson, P. R., Buster, J. E., Callas, P., Hornsby, P. J. (2007). Human chorionic gonadotropin does not alter patterns of adrenal androgen secretion in primary human adrenal reticularis and fasciculata cell culture. Menopause, 14, 316-319.
• Hughes, J. R., Callas, P., Peters, E. N. (2007). Interest in gradual cessation. Nicotine & Tobacco Research, 9, 671-675.
• Corbett, S. M., Rebuck, J. A., Rogers, F. B., Callas, P., Grindlinger, G., Desjardins, S., Hebert, J. C. (2007). Time lapse and comorbidities influence patient knowledge and pursuit of medical care after traumatic splenectomy. Journal of Trauma-Injury Infection and Critical Care, 62, 397-403.
• Sibert, K., Ricci, M. A., Caputo, M., Callas, P., Rogers, F. B., Charash, W., Malone, P., Leffler, S. M., Clark, H., Salinas, J., Wall, J., Kocmoud, C. The feasibility of using ultrasound and video laryngoscopy in a mobile telemedicine consult. To appear in Telemedicine and e-Health.
• Cole, B., Baron, J. A., Sandler, R. S., et al. (2007). A randomized trial of folic acid for the prevention of colorectal adenomas. Journal of the American Medical Association, 297, 2351-2359.
• Matee, M., Lahey, T., Vuola, J. M., Mtei, L., Cole, B., et al. (2007). Baseline mycobacterial immune responses in HIV-infected adults primed with bacille Calmette-Guérin during childhood and entering a tuberculosis booster vaccine trial. Journal of Infectious Diseases, 195, 118-123.
• Ferguson, R. J., Ahles, T. A., Saykin, A. J., McDonald, B. C., Furstenberg, C. T., Cole, B., Mott, L. A. (2007). Cognitive-behavioral management of chemotherapy-related cognitive change. Psycho-Oncology, 772-777.
• Ernstoff, M. S., Crocenzi, T. S., Seigne, J. D., Crosby, N. A., Cole, B., et al. (2007). Developing a rational tumor vaccine therapy for renal cell carcinoma: immune yin and yang. Cancer Clinical Research, 13, 733s-740s.
• Titus-Ernstoff, L., Ding, J., Perry, A., Spencer, S., Cole, B., Ernstoff, M. (2007). Factors associated with atypical moles in New Hampshire, USA. Acta Dermato-Venereologica, 87, 43-48.
• Karlsson, P., Cole, B., Price, K. N., et al. (2007). Factors predicting locoregional recurrence among breast cancer patients: role of the number of uninvolved lymph nodes. Journal of Clinical Oncology, 25, 2019-2026.
• Grau, M. V., Baron, J. A., Sandler, R. S., Wallace, K., Haile, R. W., Church, T. R., Beck, G. J., Summers, R. W., Barry, E. L., Cole, B., Snover, D. C., Rothstein, R., Mandel, J. S. (2007). Prolonged effect of calcium supplementation on risk of colorectal adenomas in a randomized trial. Journal of the National Cancer Institute, 99, 129-136.
• Olson, A. L., Gaffney, C., Starr, P., Gibson, J. J., Cole, B., Dietrich, A. J. (2007). SunSafe in the Middle School Years: a community-wide intervention to change early-adolescent sun protection. Pediatrics, 119, e247-e256.
• Gianni, L., Cole, B., Panzini, I., et al. Anemia during adjuvant non-taxane chemotherapy for early breast cancer: Incidence and risk factors from two trials of the International Breast Cancer Study Group. To appear in Supportive Care in Cancer.
• Ahles, T. A., Saykin, A. J., McDonald, B. C., Furstenberg, C. T., Cole, B., et al. Cognitive function in breast cancer patients prior to adjuvant treatment. To appear in Breast Cancer Research and Treatment.
• Cox, M., Huges, T. S., Ellis-Monaghan, J. A., Mondanaro, K. R. (2007). Hydrocarbon Links in an Octet Truss. Springer Netherlands, 43(2), 874-891. springerlink.metapress.com/content/x768h7239874185k/?p=feaa71376c0f45b1a97587774efd5f6f&pi=3
• Danforth, C., Kalnay, E., Miyoshi, T. (2007). Estimating and Correcting Global Weather Model Error. Monthly Weather Review, 135(2), 281-299. www.uvm.edu/~cdanfort/research/danforth-mwr-nudge.pdf
• Danforth, C., Kalnay, E. Using Singular Value Decomposition to Parameterize State-Dependent Model Error. To appear in Journal of the Atmospheric Sciences.
• Dinitz, J., Ling, A., Stinson, D. (2007). Perfect hash families from transversal designs. Australasian Journal of Combinatorics/ Combinatorial Mathematics Society of Australasia, 37, 233-242. ajc.maths.uq.edu.au/
• Dinitz, J., Ling, A., Danziger, P. Maximum uniformly resolvable designs with block sizes 2 and 4. To appear in Discrete Mathematics.
• Dinitz, J., Ling, A. The Hamilton-Waterloo problem with triangle-factors and Hamilton cycles: The case n=3 (mod 18). To appear in Journal of Combinatorial Mathematics and Combinatorial Computing.
• Dinitz, J., Ling, A. A note on extremal CURDs. To appear in Journal of Combinatorial Designs.
• Hanaki, N., Watts, D. J., Dodds, P. S., Peterhansl, A. (2007). Cooperation in Evolving Social Networks. Management Science, 53, 1036-1050.
• Watts, D. J., Dodds, P. S. (2007). Influentials, Networks, and Public Opinion Formation. Journal of Consumer Research, 34(4), 441-458. www.journals.uchicago.edu/JCR/
• Foote, R. (2007). Mathematics and Complex Systems. Science, 318(October 19, 2007), 410-412.
• Flores, R. J., Foote, R. M. Strongly closed subgroups and the cellular structure of classifying spaces. Journal of the American Mathematical Society.
• Kalman, G. J., Hartmann, P., Donko, Z., Golden, K. (2007). Collective Excemsscholarship in Electron-Hole Bilayers. Physical Review Letters, 98, 236801-1-4.
• Stevens, S., Thakore, N., Lakin, W., Penar, P., Tranmer, B. (2007). A Modeling Study of Ideopathic Intracranial Hypertension: Etiology, Diagnosis, and Treatment. Neurological research, 29(8), 777-786.
• Stevens, S., Previte, M., Lakin, W., Thakore, N., Penar, P. (2007). Ideopathic Intracranial Hypertension and Transverse Sinus Stenosis: A Modeling Study. Mathematical Medicine and Biology, 24, 85-109.
• Lakin, W., Stevens, S., Penar, P. (2007). Modeling Steady-State Intracranial Pressure in Microgravity: The Influence of the Blood-Brain Barrier. Aero., Space, & Envir. Medicine, 78, 932-946.
• Stevens, S., Stimpson, J., Lakin, W., Thakore, N., Penar, P. A Model for Ideopathic Intracranial Hypertention and Associated Pathological ICP Waveforms. To appear in IEEE Trans. Biomed. Engineering, 21.
• Lakoba, T., Yang, J. (2007). A generalized Petviashvili iteration method for scalar and vector Hamiltonian equations with arbitrary form of nonlinearity. J. Computat. Phys. /Elsevier, 226(2), 1668-1692 (2007).
• Lakoba, T., Yang, J. (2007). A mode elimination technique to improve convergence of iteration methods for finding solitary waves. J. Comp. Phys./Elsevier, 226(2), 1693-1709 (2007).
• Lakoba, T., Vasilyev, M. (2007). A new robust regime for a dispersion-managed multichannel 2R regenerator. Optics Express, 15(16), 10061 - 10074.
• Sands, J., Simons, L. (2007). Values at s=-1 of L-functions for multi-quadratic extensions of number fields and annihilation of the tame kernel. Journal of the London Mathematical Society/Oxford University Press, 76(3), 545-555. jlms.oxfordjournals.org/content/vol76/issue3/index.dtl
• Sands, J. L-values and the Fitting ideal of the tame kernel for relative quadratic extensions. To appear in Acta Arithmetica/IMPAN, To appear. journals.impan.gov.pl/aa/
• Sands, J. Values at s=-1 of L-functions for multi-quadratic extensions of number fields and the Fitting ideal of the tame kernel. To appear in International Journal of Number Theory/World Scientific, to appear. www.worldscinet.com/ijnt/mkt/editorial.shtml
• Single, R., Meyer, D., Mack, S. J., Lancaster, A., Erlich, H. A., Thomson, G. Biostatistics and Anthropology/Human Genetic Diversity joint report: Overview of progress in methodology, data collection, and analyses. Tissue Antigens, 69, 185-187.
• Mack, S. J., Sanchez-Mazas, A., Single, R., Meyer, D., Hill, J., Dron, H. A., Jani, A. J., Thomson, G., Erlich, H. A. Biostatistics and Anthropology/Human Genetic Diversity joint report: Population samples and genotyping technology. Tissue Antigens, 69, 188-191.
• McCahill, L. E., Ahern, J. W., Gruppi, L. A., Limanek, J., Dion, G. A., Sussman, J. A., McCaffrey, C. B., Leary, D. B., Lesage, M. B., Single, R. Enhancing compliance with Medicare guidelines for surgical infection prevention: Experience with a cross-disciplinary quality improvement team. Archives of Surgery, 142, 355-361.
• Single, R., Martin, M. P., Gao, X., Meyer, D., Yeager, M., Kidd, J. R., Kidd, K. K., Carrington, M. Global diversity and evidence for co-evolution of KIR and HLA genes. Nature Genetics, 39(9), 1114-1119.
• Privette, A., McCahill, L., Borrazzo, E., Single, R., Zubarik, R. Laparoscopic approaches to resection of suspected gastric gastrointestinal stromal tumors based on tumor location. Surgical Endoscopy, [Epub ahead of print].
• Gourraud, P. A., Cambon-Thomsen, A., Dauber, E. M., Feolo, M., Hansen, J., Mickelson, E., Single, R., Thomsen, M., Mayr, W. R. Nomenclature for HLA microsatellites. Tissue Antigens, 69, 210-213.
• Lancaster, A. K., Single, R., Nelson, M. P., Solberg, O., Thomson, G. PyPop update - a software pipeline for large-scale multi-locus population genomics. Tissue Antigens, 69, 192-197.
• Hamdy, H., Son, M., Bentil, D. (2007). The Role of Negative Binomial Sampling in Determining the Distribution of Minimum Chi-Square. International Journal of Contents, 3(1), 1-8.
• Wilson, M. (2007). The intrinsic square function. Revista Matematica Iberoamericana, 23(3), 771-791.
• Wilson, M. (2007). Non-compact Littlewood-Paley theory for non-doubling measures. Studia Mathematica, 183(3), 197-223.
• Chen, Z., Yang, J. Nonlinear Spectrum Reshaping and Gap-Soliton-Train Trapping. Phys. Rev. Lett., 98, 213903 (2007).
• Chen, Z., Yang, J. Observation of in-band lattice solitons. Phys. Rev. Lett., 99, 243901 (2007).
• Wang, J., Yang, J. Two-dimensional defect modes in optically induced photonic lattices. Phys. Rev. A, 76, 013828 (2007).
• Zhu, Y., Yang, J. Universal fractal structures in the weak interaction of solitary waves in generalized nonlinear Schroedinger equations. Phys. Rev. E, 75, 036605 (2007).
• Yang, J., Lakoba, T. (2007). Universally-Convergent Squared-Operator Iteration Methods for Solitary Waves in General Nonlinear Wave Equations. Studies in Applied Mathematics, 118, 153-197 (2007).
• Zhu, Y., Yang, J. A Universal Map for Fractal Structures in Weak Solitary Wave Interactions. To appear in Phys. Rev. Lett. (2008).
• Yu, J., Yang, Y., Liu, A. K., Zhao, Y. Dynamics of wave and ice interaction in the marginal ice zone of the Bering Sea. To appear in International Journal of Remote Sensing.

School of Engineering

• Du, J., Aultman-Hall, L. (2007). Increasing the Accuracy of Trip Rate Information from Passive Multi-Day GPS Travel Datasets: Automatic Trip Identification Issues. Transportation Research A, 41(3), 220-232.
• Dewoolkar, M., Hwang, J., Ko, H. Centrifuge modeling of granular soil response over active circular trapdoors. Soils and Foundations, 47(5). www.jiban.or.jp/e/sf/sf.html
• Frolik, J. (2007). Implementation of handheld, RF Test equipment in the classroom and the field. IEEE Trans. Education, 50(3).
• Frolik, J. On appropriate models for characterizing hyper-Rayleigh fading. To appear in IEEE Transaction on Wireless Communications.
• Ketcham, R., Frolik, J., Covell, J. Propagation characterization for in-aircraft wireless sensor systems. To appear in IEEE Trans. Aerospace and Electronic Systems.
• Liang, B., Frolik, J., Wang, X. Sean. Energy-efficient dynamic spatial resolution control for wireless sensor clusters. To appear in International Journal of Distributed Sensor Networks.
• Frolik, J. (2007). A case for considering hyper-Rayleigh fading channels. To appear in IEEE Transaction on Wireless Communications, 6(4).
• Hill, J., Kysela, D., Elimelech, M. Isolation and Assessment of Phytate-Hydrolyzing Bacteria from the DelMarVa Peninsula. Environmental Microbiology, 9(12), 3100-3107.
• Lim, B., Yeung, P., Cheng, C., Hill, J. (2007). Distribution and Diversity of Phytate-Mineralizing Bacteria. International Journal of Microbial Ecology, 1, 1-10.
• Peccia, J., Milton, D., Reponen, T., Hill, J. A Role for Environmental Engineering and Science in Preventing Bioaerosol Related Disease. To appear in Environmental Science and Technology.
• Hill, J., Kalkanci, O., McMurry, J., Koser, H. Hydrodynamic Surface Interactions enable Escherichia coli to Seek Efficient Routes to Swim Upstream. Physical Review Letters, 98(6), 1-4.
• Louisos, W. F., Alexeenko, A. A., Hitt, D., Zilic, A. Design Considerations for Supersonic Micronozzles. To appear in International Journal of Manufacturing Research.
• Louisos, W. F., Hitt, D. Viscous Effects on Performance of 2D Supersonic Linear. To appear in AIAA Journal of Spacecraft & Rockets.
• Yang, W., Holmen, B. (2007). Effects of relative humidity on chloroacetanilide and dinitroaniline herbicide desorption from agricultural PM2.5 on quartz fiber filters. Environmental Science & Technology, 41(11), 3843-3849.
• Holmen, B., Vikara, D. (2007). Ultrafine Particle Number Concentrations from Hybrid Urban Transit Buses Using Onboard Single-Diameter Scanning Mobility Particle Sizer Measurements. Transportation Research Record #1987, 54-61.
• Holmen, B., Miller, D. R., Hiscox, A. L., Yang, W., Wang, J., Sammis, T., Bottoms, R. Near-source particulate emissions and plume dynamics from agricultural field operations. To appear in Journal of Atmospheric Chemistry.
• Hiscox, A. L., Miller, D. R., Holmen, B., Yang, W., Wang, J. (2008). Near-field dust exposure from cotton field tilling and harvesting. J Environ Qual 2008, 37(3), 551-556.
• Sonntag, D. B., Gao, H. O., Holmen, B. Modeling on-road particle number emissions from a hybrid diesel-electric bus - Exploratory econometric analysis. To appear in Transportation Research Record 2007, 40-48.
• Costi, J. J., Stokes, I. A. F., Gardner-Morse, M. G., Iatridis, J. Frequency dependent behavior of the intervertebral disc in response to each of six degree of freedom dynamic loading: Solid phase and fluid phase contributions. To appear in Spine.
• Costi, J. J., Stokes, I. A., Gardner-Morse, M., Laible, J. P., Scoffone, H. M., Iatridis, J. (2007). Direct measurement of intervertebral disc maximum shear strain in six degrees of freedom: Motions that place disc tissue at risk of injury. J Biomechanics, 40(11), 2457-66.
• Iatridis, J., MacLean, J. J., O’Brien, M., Stokes, I. A. F. (2007). Measurements of proteoglycan and water content distribution in human lumbar intervertebral discs. Spine, 32(14), 1493-7.
• Iatridis, J., Wuertz, K., Godburn, K., Neidlinger-Wilke, C., Urban, J. P. G., Iatridis, J. Behavior of mesenchymal stem cells in the chemical microenvironment of the intervertebral disc. To appear in Spine.
• Korecki, C., MacLean, J. J., Iatridis, J. (2007). Characterization of an in vitro intervertebral disc organ culture system. Eur Spine J, 16(7), 1029-37.
• Korecki, C. L., MacLean, J. J., Iatridis, J. Dynamic Compression Effects on Intervertebral Disc Mechanics and Biology. To appear in Spine.
• MacLean, J. J., Owen, J. P., Iatridis, J. (2007). Role of endplates in contributing to compression behaviors of motion segments and intervertebral discs. J Biomechanics, 40(1), 55-63.
• Maclean, J. J., Roughley, P. J., Monsey, R. D., Alini, M., Iatridis, J. (2008). In vivo intervertebral disc remodeling: Kinetics of mRNA expression in response to a single loading event. J Orthop Res, e-pub.
• Masuoka, K., Michalek, A. J., MacLean, J. J., Stokes, I. A., Iatridis, J. (2007). Different effects of static versus cyclic compressive loading on rat intervertebral disc height and water loss in vitro. Spine, 32(18), 1974-9.
• Michalek, A. J., Iatridis, J. (2007). A numerical study to determine pericellular matrix modulus and evaluate its effects on the micromechanical environment of chondrocytes. J Biomechanics, 40(6), 1405-9.
• Rogers, R., Norian, J., Christman, G., Abu-Asab, M., Malik, M., Chen, F., Korecki, C., Iatridis, J., Catherino, W. H., Tuan, R., Leppert, P., Segars, J. H. Mechanical homeostasis is altered in uterine leiomyoma. To appear in Am J Obstet Gynecol.
• Stinnett-Donnelly, J. M., MacLean, J. J., Iatridis, J. (2007). A Removable precision device for in vivo mechanical compression of rat tail intervertebral discs. ASME Journal of Medical Device, 1(1), 56-61.
• Liu, X., Marshall, J. (2007). Amplification of three-dimensional perturbations during parallel vortex-cylinder interaction. Journal of Fluid Mechanics, 573, 457-478.
• Li, S., Marshall, J. (2007). Discrete-element simulation of micro-particle deposition on a cylindrical fiber in an array. Journal of Aerosol Science, 38, 1031-1046.
• Marshall, J. (2007). Particle aggregation and capture by walls in a particulate aerosol channel flow. Journal of Aerosol Science, 38, 333-351.
• Mirchandani, G., Mohamed, E. (2007). A Uniformly Convergent Approximation for Ideal Complex Half-Band Filters. To appear in ISAST Transactions on Electronics & Signal Processing, 1(1), 24-29. www.isastorganization.org/about_isast.html
• Cartwright, N. A., Oughstun, K. (2007). Uniform Asymptotics Applied to Ultrawideband Pulse Propagation. Studies in Industrial and Applied Mathematics (SIAM) Review, 49(4), 628-648.
• Pinder, G., Smith, J. J. Efficient groundwater remediation system design subject to uncertainty using robust optimization. Jour. Water Resour. Planning and Management, ASCE.
• Pinder, G. Flexible time-varying optimization methodology for the solution of groundwater management problems. European Journal of Operational Research, 180(2), 770-785.
• Pinder, G. Hydraulic Conductivity Estimation via Fuzzy Analysis. Math Geol, DOI 10.1007/s11004-007-9123-7, 1-16.
• Costanza, R., Fisher, B., Ali, S., Beer, C., Bond, L., Boumans, R., Danigelis, N. L., Dickinson, J., Elliott, C., Farley, J., Gayer, D., Glenn, L. M., Hudspeth, T., Mahoney, D., McCahill, L., McIntosh, B., Reed, B., Rizvi, S. A., Rizzo, D., Simpatico, T., Snapp, R. (2008). An integrative approach to quality of life measurement, research, and policy. Surveys and Perspectives Integrating Environment and Society, 1(1), 11-15. www.surv-perspect-integr-environ-soc.net/1/issue1.html
• Costanza, R., Fisher, B., Ali, S., Beer, C., Bond, L., Boumans, R., Danigelis, N. L., Dickinson, J., Elliott, C., Farley, J., Gayer, D., Glenn, L. M., Hudspeth, T., Mahoney, D., McCahill, L., McIntosh, B., Reed, B., Rizvi, S. A., Rizzo, D., Simpatico, T., Snapp, R. (2007). Quality of Life: An Approach Integrating Opportunities, Human Needs, and Subjective Well-Being. Ecological Economics, 61, 267-276. www.elsevier.com/locate/ecolecon
• Besaw, L. E., Rizzo, D. (2007). Spatial Prediction and Stochastic Conditional Simulation using Artificial Neural Networks. Water Resources Research, 43(W11409).
• Doris, J., Rizzo, D., Dewoolkar, M. Forecasting Vertical Ground Surface Movement from Shrinking/Swelling Soils with Artificial Neural Networks. Int. J. Numer. Anal. Meth. Geomech.. www.interscience.wiley.com
• Langevin, H. M., Rizzo, D., Fox, J. R., Badger, G. J., Wu, J., Konofagou, E. E., Stevens-Tuttle, D., Bouffard, N. A., Krag, M. H. (2007). Dynamic Morphometric Characterization of Local Connective Tissue Network Structure in Humans using Ultrasound. BMC Systems Biology, 1(25).
• McBride, M., Hession, W. C., Rizzo, D., Thompson, D. M. (2007). The influence of riparian vegetation on near-bank. Earth Surface Processes and Landforms, 32, 2019-2037. www.interscience.wiley.com
• Clark, J. S., Rizzo, D., Watzin, M. C., Hession, W. C. Geomorphic Condition of Fish Habitat in Streams: An Analysis Using Hydraulic Modeling and Geostatistics. To appear in River Research and Applications, 23.
• Headrick, R. L., Wo, S., Sansoz, F., Anthony, J. E. (2008). Anisotropic Mobility in Large Grain Size Solution Processed Organic Semiconductor Thin Films. Applied Physics Letters, 92, 063302.
• Sansoz, F., Dupont, V. (2007). Atomic Mechanism of Shear Localization during Indentation of a Nanostructured Metal. Materials Science and Engineering C, 27, 1509-1513.
• Afanasyev, K. A., Sansoz, F. (2007). Strengthening in Gold Nanopillars with Nanoscale Twins. Nano Letters, 7(7), 2056-2062.
• Sansoz, F., Molinari, J. F. (2007). Size and Microstructure Effects on the Mechanical Behavior of FCC Bicrystals by Quasicontinuum Method. Thin Solid Films, 515/6, 3158-3163.
• Sansoz, F., Stevenson, K. D., Govinthasamy, R., Murthy, N. S. Ultra Surface Smoothening of Nanocrystalline Ni on Si Substrate by Direct Electrodeposition. To appear in Scripta Materialia.
• Bedoui, F., Sansoz, F., Murthy, N. S. Incidence of Nanoscale Heterogeneity on the Nanoindentation of a Semicrystalline Polymer: Experiments and Modeling. To appear in Acta Materialia.
• Nguyen, T., Varhue, W., Pino, R., Cross, M., Lavoie, M., Lee, J., Adams, E. Heteroepitaxial Growth of GaSb on Si(111). Journal of Applied Physics(101), 073707.
• Erturk, M., Xia, T., Clark, W. (2007). Gate Voltage Dependence of MOSFET 1/f Noise Statistics. IEEE Electron Device Letters, 28(9), 3.
• Xia, T., Zheng, H. (2007). Timing Jitter Characterization for Mixed Signal production Test Using the Interpolation Algorithm. IEEE Transactions on Industry Electronics, 54(2), 10.
• Xia, T., Campbell, T. J., Li, J., Wolf, R., Sweeney, J. F. (2007). Jitter Measurement Circuit for Mixed Signal Production Test. Elsevier.
• Smith, J., Xia, T. High-Resolution Delay Testing of Interconnect Paths in Field Programmable Gate Arrays. To appear in IEEE Transactions on Instrumentation and Measurement.

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Non-Refereed Journal Articles

Mathematics and Statistics

• Aleong, J. Modeling of Strategic Planning Related to Land Use. Statistical Association, Joint Statistical Meeting, Colorado, August 2008.
• Aleong, J. The Generalized Linear Model with Spatial Variation and Multiple Covariates. To appear in American Statistical Association, Joint Statistical Meeting, Colorado, August 2008.
• Callas, P. Searching the biomedical literature: study designs and critical appraisal. To appear in Clinical Laboratory Science.
• Read, H. (2007). Mathematica 6 in the Calculus Classroom. Mathematica in Education and Research / iJournals, 12(3), 208 - 213.
• Voight, J. Enumeration of totally real number fields of bounded root discriminant. To appear in Lecture Notes in Computer Science, 14.

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Conference Proceedings

Computer Science

• Arslan, A., Wu, X. (2007). Iterative refinement of repeat sequence specification using constrained pattern matching. In Jack Y. Yang, Mary Q. Yang, Michelle M. Zhu, Yanqing Zhang, Hamid R. Arabnia, Youping Deng and Nikolaus Bourbakis (Eds.), The 7th IEEE Symposium on Bioinformatics and Biotechnology (BIBE 2007); 1199-1203. www.cs.gsu.edu/BIBE07/
• Arslan, A. (2007). Phylogeny by top down clustering using a given multiple alignment. In Jack Y. Yang, Mary Q. Yang, Michelle M. Zhu, Yanqing Zhang, Hamid R. Arabnia, Youping Deng and Nikolaus Bourbakis (Eds.), The 7th IEEE Symposium on Bioinformatics and Biotechnology (BIBE 2007); 809-814. www.cs.gsu.edu/BIBE07/
• Arslan, A. (2007). Sequence alignment guided by common motifs described by context free grammars. University of Colorado at Colorado Springs: The 4th Biotechnology and Bioinformatics Symposium (BIOT) 2007. www.biotconf.org/biot07.shtml
• Arslan, A. (2007). A largest common d-dimensional subsequence of two d-dimensional strings. In Erzsebet Csuhaj-Varju, Zoltan Esik (Eds.), The 16th International Symposium on Fundamentals of Computation Theory (FCT 2007), vol. LNCS 4639; 40-51. www.conferences.hu/fct2007/
• Bongard, J. (2007). Synthesizing physically-realistic environmental models from robot exploration. In Advances in Artificial Life: 9th European Conference.
• Bongard, J. (2007). Exploiting multiple robots to accelerate self-modeling. In Proceedings of the 9th Annual Conference on Genetic and Evolutionary Computation.
• Bongard, J. (2007). Action-selection and crossover strategies for self-modeling machines. In Proceedings of the 9th Annual Conference on Genetic and Evolutionary Computation.
• Payne, J. L., Eppstein, M., Goodnight, C. J. (2007). Sensitivity of self-organized speciation to long distance dispersal. In IEEE Symposium on Artificial Life (Alife’07); 1-7.
• Payne, J. L., Eppstein, M. (2007). Takeover times on scale-free topologies. In Genetic and Evolutionary Computation Conference (GECCO); 308-315.
• Payne, J. L., Eppstein, M. (2007). Using pair approximations to predict takeover dynamics in spatially structured populations. In Genetic and Evolutionary Computation Conference (GECCO), vol. LBP; 2557-2563.
• Al-Kateb, M., Lee, B., Wang, X. Sean (2007). Reservoir sampling over memory-limited stream joins. In Proceedings of the 19th International Conference on Scientific and Statistical Database Management (SSDBM). ssdbm2007.cpsc.ucalgary.ca/
• Tran, T., Lee, B. (2007). Transformation of continuous aggregation join queries over data streams. In Proceedings of the 10th International Symposium on Spatial and Temporal Databases (SSTD07), Lecture Note in Computer Science, Volume 4605; 330-347. www.cse.ust.hk/~sstd07/
• Tran, T., Lee, B. (2007). Why not semijoins for streams, when distributed? In Proceedings of the International Workshop on Data Stream Processing (STREAM) in the Second International Conference on Digital Telecommunications (ICDT). www.iaria.org/conferences2007/STREAM.html
• Al-Kateb, M., Lee, B., Wang, X. Sean. (2007). Adaptive-size reservoir sampling over data streams. In Proceedings of the 19th International Conference on Scientific and Statistical Database Management (SSDBM). ssdbm2007.cpsc.ucalgary.ca/
• Pechenick, A., Rizzo, D. Using Artificial neural networks to predict local disease risk indicators with multi-scale weather, land and crop data. www.iemss.org/iemss2008/
• Shroff, P., Skalka, C., Smith, S. F. (2007). The nuggetizer: Abstracting away higher-orderness for program verification. In Asian Programming Languages Symposium.
• Skalka, C. (2007). Type safe dynamic linking for jvm access control. In ACM Conference on Principles and Practice of Declarative Programming; 51-62.
• Compton, D. C., Snapp, R. (2007). Detecting trace components in liquid chromatography/mass spectrometry data sets with two-dimensional wavelets. In Frédéric Truchetet, Olivier Laligant (Eds.), Procedings of the SPIE: Wavelet Applications in Industrial Processing V, vol. 6763. spiedl.aip.org/vsearch/servlet/VerityServlet?KEY=SPIEDL&smode=strresults&sort=rel&maxdisp=25&threshold=0&pjournals=SPIEDL&possible1=Detecting+trace++components&possible1zone=article&SMODE=strsearch&OUTLOG=NO&deliveryType=spiedl&viewabs=PSISDG&key=DISPLAY&docID=1&page=0&chapter=0
• Berkhin, P., Caruana, R., Wu, X., Gaffney, S., Eds. (2007). KDD 2007: Proceedings of the 13th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, August 12-15, 2007, San Jose, CA, USA. New York: Association for Computing Machinery.
• He, D., Arslan, A. N., He, Y., Wu, X. (2007). Iterative refinement of repeat sequence specification using constrained pattern matching. In Proceedings of the IEEE 7th International Symposium on Bioinformatics & Bioengineering (BIBE 2007), Harvard Medical School Conference Center, Cambridge, Massachusetts, USA, October 14-17, 2007; 1199-1203.
• He, D., Wu, X., Zhu, X. (2007). SAIL-APPROX: An efficient on-line algorithm for approximate pattern matching with wildcards and length constraints. In Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM '07), San Jose, CA, USA, November 2-4, 2007; 151-158.
• He, Y., Wu, X., Zhu, X., Arslan, A. N. (2007). Mining frequent patterns with wildcards from biological sequences. In Proceedings of the 2007 IEEE International Conference on Information Reuse and Integration (IRI-07), August 13 - 15, 2007, Hilton Hotel, Las Vegas, USA; 329-334.
• Hu, X., Liu, W., Wang, D., Wu, X. (2007). Mining frequent itemsets using a pruned concept lattice. In Proceedings of the Fourth International Conference on Fuzzy Systems and Knowledge Discovery, 24-27 August 2007, Haikou, China, Volume 3; 606-610.
• Hu, X., Wang, D., Wu, X. (2007). Varying density spatial clustering based on a hierarchical tree. In Proceedings of the Fifth International Conference on Machine Learning and Data Mining in Pattern Recognition (MLDM'2007), July 18-20, 2007, Leipzig, Germany; 188-202.
• Ramakrishnan, N., Zaiane, O. R., Shi, Y., Clifton, C. W., Wu, X., Eds. (2007). Proceedings of the Seventh IEEE International Conference on Data Mining (ICDM 2007), October 28 - 31, 2007, Embassy Suites Hotel, Omaha, NE, USA. New York: Association for Computing Machinery.
• Tao, D., Sun, J., Wu, X., Li, X., Shen, J., Maybank, S. J., Faloutsos, C. (2007). Probabilistic tensor analysis with Akaike and Bayesian information criteria. In Proceedings of the 14th International Conference on Neural Information Processing (ICONIP 2007), 13-16 November, 2007, Kitakyushu, Japan; 791-801.
• Tung, A. K. H., Zhu, Q., Ramakrishnan, N., Zaiane, O. R., Shi, Y., Clifton, C. W., Wu, X., Eds. (2007). Proceedings of ICDM Workshops 2007, October 28 - 31, 2007, Embassy Suites Hotel, Omaha, NE, USA. New York: Association for Computing Machinery.
• Wu, X., Arslan, A. (2007). Mining Frequent Patterns with Wildcards from Biological Sequences (pp. 329-334). IEEE International Conference on Information Reuse and Integration (IEEE IRI-07). www.sis.pitt.edu/~iri07/
• Yu, K., Wang, H., Wu, X. (2007). A parallel algorithm for learning Bayesian networks. In Proceedings of the 11th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD 2007), Nanjing, China, 22-25 May 2007; 1055-1063.
• Zhang, Y., Wu, X. (2007). Noise modeling with associative corruption rules. In Proceedings of the Seventh IEEE International Conference on Data Mining (ICDM '07), Omaha, Nebraska, USA, October 28-31, 2007; 733-738.
• Zhang, J., Zhang, S., Zhu, X., Wu, X., Zhang, C. (2007). Measuring the uncertainty of differences for contrasting groups. In Proceedings of the Twenty-Second National Conference on Artificial Intelligence (AAAI-07), Vancouver, British Columbia, Canada, July 22-26, 2007; 1920-1921.
• Zhu, X., Wu, X. (2007). Discovering relational patterns across multiple databases. In Proceedings of the 23rd IEEE International Conference on Data Engineering (ICDE 2007), April 16-20, 2007, The Marmara Hotel, Istanbul, Turkey; 726-735.
• Zhu, X., Wu, X. (2007). Mining complex patterns across sequences with gap requirements. In Proceedings of the 20th International Joint Conference on Artificial Intelligence (IJCAI-07), Hyderabad, India, January 6-12, 2007; 2934-2940.
• Zhu, X., Wu, X., Khoshgoftaar, T. M., Shi, Y. (2007). An empirical study of the noise impact on cost-sensitive learning. In Proceedings of the 20th International Joint Conference on Artificial Intelligence (IJCAI-07), Hyderabad, India, January 6-12, 2007; 1168-1173.

Mathematics and Statistics

• Thakore, N., Stevens, S., Lakin, W. (2007). A modeling study of intracranial pressure waveforms in idiopathic intracranial hypertension. In American Academy of Neurology.
• Sands, J., Tangedal, B. Functorial Properties of Stark Units in Multiquadratic Extensions. New York: Lecture Notes in Computer Science/Springer Verlag. www.springer.com/computer/lncs?SGWID=0-164-6-73659-0
• Yu, J., Gross, L. K. Complex Dynamic Behavior on Transition in a Solid Combustion Model. Boston, MA: Print Proceedings of the 2006 International Conference on Complex Systems.

School of Engineering

• Dewoolkar, M. In Mandar Dewoolkar and Joseph Koester (Ed.), Dynamic Response and Soil Properties (160th ed.). ASCE Geotechnical Special Publication.
• Dewoolkar, M., Oka, L. (2007). In Dewoolkar and Koester (Ed.), Effect of existing dams on liquefaction potential analysis of foundation soils (160th ed.). ASCE Geotechnical Special Publication.
• Frolik, J. (2007). Integration of Tablet PCs into collaborative learning environments. ASEE Annual Conference.
• Ketcham, R., Frolik, J. (2007). A low-complexity, compact antenna for mitigating frequency-selective fading. Sixth International Conference on Information Processing in Sensor Networks (IPSN07).
• DiStasi, S., Frolik, J., Ketcham, R., Galbreath, J. (2007). Wireless sensors, sensing wireless (WSSW) for the characterization of multipath fading. Sixth International Conference on Information Processing in Sensor Networks (IPSN07).
• Frolik, J., Sansoz, F., Rizzo, D., Sadek, A. (2007). A Multidisciplinary Curricular Effort Incorporating Wireless Sensors. Honolulu, HI: ASEE Annual Conference: Multidisciplinary Engineering Division.
• Louisos, W. F., Hitt, D. Heat Transfer Effects on Supersonic Micro-Nozzle Performance (vol. 2007, pp. 3987). AIAA.
• Zilic, A., Hitt, D., Alexeenko, A. a. Numerical Simulations of a Micro-Scale Linear Aerospike Nozzle (vol. 2007, pp. 3984). AIAA.
• Louisos, W. F., Hitt, D. Numerical Studies of Thrust Production in 2-D Supersonic Bell Micronozzles (vol. 2008, pp. 5233). AIAA.
• Hitt, D., Louisos, W. F. Performance Characteristics of 3D Supersonic Micronozzles (vol. 2008, pp. 4279). AIAA.
• Korecki, C. L., Kuo, C. K., Tuan, R. S., Iatridis, J. (2007). Effect of Age and Frequency on Intervertebral Disc Cell Response to Dynamic Compression (pp. SBC2007-176595). Keystone, CO: Proceedings of the 2007 Summer Bioengineering Conference.
• Wuertz, K., MacLean, J. J., Stinnett-Donnelly, J., Barbir, A., Roughley, P., Alini, M., Iatridis, J. (2007). Biological Response of the Intervertebral Disc to Chronic Dynamic Compression - An in vivo Animal Study (pp. 23). Transactions of the International Society for the Study of the Lumbar Spine.
• Korecki, C. L., MacLean, J. J., Iatridis, J. (2007). Development of a System for Application of Dynamic Mechanical Compression on Intervertebral Discs in Organ Culture and Investigation of Load Magnitude Effects (pp. SBC2007-176569). Keystone, CO: Proceedings of the 2007 Summer Bioengineering Conference.
• Costi, J. J., Stokes, I. A., Gardner-Morse, M. G., Lubinski, J. R., Iatridis, J. (2007). Disc mechanical response to cyclic loading - poroelastic and viscoelastic contributions (pp. P34). Transactions of the International Society for the Study of the Lumbar Spine.
• Wuertz, K., Iatridis, J., Godburn, K., Iatridis, J. (2007). Influence of the Intervertebral Disc Microenvironment on Gene expression and Proliferation of Mesenchymal Stem Cells (pp. 112). Transactions of the International Society for the Study of the Lumbar Spine.
• Korecki, C. L., Costi, J. J., Iatridis, J. (2007). Needle puncture affects intervertebral disc mechanics and biology in an organ culture model (pp. pOSTER 92). Transactions of the International Society for the Study of the Lumbar Spine.
• Clark, J., Rizzo, D., Hession, W. C., Watzin, M. C., Laible, J. (2007). Evaluating the Influence of Geomorphic Conditions on Instream Fish Habitat using Hydraulic Modeling and Geostatistical Analyses. New Zealand: 6th International Conference on Ecohydraulics.
• Yurgey, B., Beninati, M. L., Marshall, J., Mousel, J. (2007). Computational analysis of sediment entrainment in three-dimensional channel flow (vol. 52). Bulletin of the American Physical Society.
• AlMomani, T., Udaykumar, H.S., Marshall, J., Chandran, K.B. (2007). Red blood cells / platelet interaction in arteriols. Proceedings of the ASME 2007 Summer Bioengineering Conference.
• Cartwright, N. A., Oughstun, K. (2008). The Effect of Conductivity on the Brillouin Precursor. 2008 USNC/URSI National Radio Science Meeting.
• Oughstun, K., Cartwright, N. A. (2007). Ultrashort Electromagnetic Pulse Dynamics in the Singular and Weak Dispersion Limits. Prague: Progress in Electromagnetics Research Symposium 2007.
• Oughstun, K. (2007). Optimal Pulse Penetration through Dielectric Barriers. Ottawa: 2007 CNC/USNC North American Radio Science Meeting.
• Cartwright, N. A., Oughstun, K. (2007). Ultrawideband Pulse Penetration in an Isotropic Collisionless Plasma. Ottawa: 2007 CNC/USNC North American Radio Science Meeting.
• Cartwright, N. A., Oughstun, K. (2007). Ultrawideband Pulse Penetration in a Debye Medium with Static Conductivity. Montreal: Fourth IASTED International Conference on Antennas, Radar, and Propagation.
• Pinder, G. Groundwater Goes Computational: My Role (vol. CD). World Environmental and Water Resources Congress, ASCE, Tampa Florida.
• Morrissey, L. A., Pelletier, K., Rizzo, D., Besaw, L. E., Kline, M., Cahoon, B. (2007). High Resolution Remote Sensing to Characterize Geomorphic Stability of River Reaches. Burlington: NEARC Northeast Arc Users Group.
• Besaw, L. E., Rizzo, D. (2007). An Alternative Method for Performing Conditional Simulation Using a Counterpropagation Network. Omaha, NE: Seventh IEEE International Conference on Data Mining.
• Rizzo, D., Besaw, L. E., Kline, M. (2007). Artificial Neural Networks for the Prediction of Channel Geomorphic Condition and Stream Sensitivity. Tampa, FL: ASCE World Environmental & Water Resources Congress.
• Li, Z., Rizzo, D., Hayden, N. (2007). Using an Extended Kalman Filter with a Flow and Transport Model to Identify Contaminant Source Locations. Tampa, FL: ASCE World Environmental & Water Resources Congress.
• Clark, J., Rizzo, D., Hession, W. C., Watzin, M. C., Laible, J. (2007). Evaluating the Influence of Geomorphic Conditions on Instream Fish Habitat using Hydraulic Modeling and Geostatistical Analyses. New Zealand: 6th International Conference on Ecohydraulics.
• Deng, C., Sansoz, F. (2007). Uniaxial Compression Behavior of Bulk Nano-twinned Gold from Molecular Dynamics Simulation (vol. 1049, pp. 1049-AA08-05). MATERIALS RESEARCH SOCIETY SYMPOSIUM PROCEEDING.
• Xia, T., Smith, J. (2007). High Precision Delay Testing of Virtex-4 FPGA Design. IEEE International Midwest Symposium on Circuits & Systems (MWSCAS).
• Xia, T., Smith, J. (2007). High Resolution Delay Testing of Interconnect Paths in Xilinx Virtex-4 FPGAs (pp. 6). IEEE North Atlantic Test Workshop.
• Erturk, M., Xia, T., Wolf, R., Scagnelli, D., Clark, W. Statistical Variations in VCO Phase Noise due to Upconverted MOSFET 1/f Noise (pp. 4). IEEE Radio Frequency Integrated Circuits Symposium (RFIC).
• Xia, T., Wyatt, S. High Output Resistance and Wide Swing Voltage Charge Pump Circuit. IEEE International Symposium on Quality Electronic Design (ISQED).

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Other Intellectual Contributions

Computer Science

• Online Book
  Erickson, R. Using MS Office 2007 Correctly. www.cems.uvm.edu/~erickson/education/office2007/

• Software
  Krivov, S. (2007). OLMaps, ZK wrapper for web mapping tool Open Layers.

• Software
  Krivov, S. (2008). RiskWiz, open source Bayesian Networks library.

• Translation or Transcription
  Wieland, R., Mirschel, W., Ziebel, B., Pechenick, A. Function approximation in ecological modeling using soft computing. www.iemss.org/iemss2008/

Mathematics and Statistics

• Technical Report
  Aleong, J. The National Summer Transportation Institute at UVM. FHWA.

• User Guide
  Single, R., Lancaster, A., Nelson, M. P., Meyer, D., Single, R. M. PyPop User Guide: User Guide for Python for Population Genetics, Version 0.6.0. Copyright (c) 2003-2007. Regents of the University of California. www.uvm.edu/~pypop/docs and www.pypop.org/docs

• Referee's report
  Wilson, M. Referee's report on "The Dyadic integral means spectrum for Bloch functions". London: London Mathematical Society.

• Referee's report
  Wilson, M. Referee's report on "The weak type inequality for martingales with variable exponent". Barcelona: Publicacions Matematiques.

School of Engineering

• Technical Report
  Marshall, J. (2007). Simulation method for particle adhesion in vehicle cooling systems. Iowa City, Iowa: Iowa Institute of Hydraulic Research.

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